Evidence map›Paper›PMID 21775434›Full record

ArticleThe Journal of biological chemistry2011

Crystal structure of Fushi tarazu factor 1 ligand binding domain/Fushi tarazu peptide complex identifies new class of nuclear receptors.

Jiho Yoo, Sunggeon Ko, Hyeyon Kim, Heidi Sampson, Ji-Hye Yun, Kwang-Min Choe, Iksoo Chang, Cheryl H Arrowsmith, Henry M Krause, Hyun-Soo Cho and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Jiho YooDepartment of Biology, College of Life Science and Biotechnology, Yonsei University, Shinchon-dong, Seodaemun-gu 134, Seoul 120-749, Korea.
Sunggeon Ko
Hyeyon Kim
Heidi Sampson
Ji-Hye Yun
Kwang-Min Choe
Iksoo Chang
Cheryl H Arrowsmith
Henry M Krause
Hyun-Soo Cho
Weontae Lee
University of Seoul · KRYonsei University · KRUniversity of Toronto · CAMcGill University · CAPusan National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The interaction between the orphan nuclear receptor FTZ-F1 (Fushi tarazu factor 1) and the segmentation gene protein FTZ is critical for specifying alternate parasegments in the Drosophila embryo. Here, we have determined the structure of the FTZ-F1 ligand-binding domain (LBD)·FTZ peptide complex using x-ray crystallography. Strikingly, the ligand-binding pocket of the FTZ-F1 LBD is completely occupied by helix 6 (H6) of the receptor, whereas the cofactor FTZ binds the co-activator cleft site of the FTZ-F1 LBD. Our findings suggest that H6 is essential for transcriptional activity of FTZ-F1; this is further supported by data from mutagenesis and activity assays. These data suggest that FTZ-F1 might belong to a novel class of ligand-independent nuclear receptors. Our findings are intriguing given that the highly homologous human steroidogenic factor-1 and liver receptor homolog-1 LBDs exhibit sizable ligand-binding pockets occupied by putative ligand molecules.

Indexed as

AnimalsBinding SitesCrystallography, X-RayDNA-Binding ProteinsDrosophila melanogasterDrosophila ProteinsLigandsPeptidesProtein BindingProtein ConformationProtein Structure, QuaternaryProtein Structure, TertiaryReceptors, Cytoplasmic and NuclearSequence Homology, Amino AcidTranscription FactorsTranscription, GeneticDNA-Binding ProteinsDrosophila ProteinsLigandsnuclear hormone receptor FTZ-F1, DrosophilaPeptidesReceptors, Cytoplasmic and NuclearTranscription Factors

Identifiers

PMID21775434
PMCPMC3173125
OpenAlexW1996500825

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.