Evidence map›Paper›PMID 21772049›Full record

ArticleBlood2011

HDAC inhibitors and decitabine are highly synergistic and associated with unique gene-expression and epigenetic profiles in models of DLBCL.

Matko Kalac, Luigi Scotto, Enrica Marchi, Jennifer Amengual, Venkatraman E Seshan, Govind Bhagat, Netha Ulahannan, Violetta V Leshchenko, Alexis M Temkin, Samir Parekh and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Blood, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 85 papers.

0numbers the graph read from it
0cells of the map it votes in
85citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

85 citing papers in PubMed, 151 citations in OpenAlex.

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25 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Matko KalacNew York University Cancer Institute, New York University Langone Medical Center, 522 First Avenue, New York, NY 10016, USA.
Luigi Scotto
Enrica Marchi
Jennifer Amengual
Venkatraman E Seshan
Govind Bhagat
Netha Ulahannan
Violetta V Leshchenko
Alexis M Temkin
Samir Parekh
Benjamin Tycko
Owen A O'Connor
NYU Langone Health · USAlbert Einstein College of Medicine · USColumbia University Irving Medical Center · USMemorial Sloan Kettering Cancer Center · US

Funding

Optimizing MSNP for profiling DNA methylation in cancers and precursor lesionsR21CA125461 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI TYCKO, BENJAMIN · 2009 to 2010
$389k
NCI NIH HHS R21 CA125461NCI NIH HHS R21CA125461
6 · The paper itself

Abstract

Interactions between histone deacetylase inhibitors (HDACIs) and decitabine were investigated in models of diffuse large B-cell lymphoma (DLBCL). A number of cell lines representing both germinal center B-like and activated B-cell like DLBCL, patient-derived tumor cells and a murine xenograft model were used to study the effects of HDACIs and decitabine in this system. All explored HDACIs in combination with decitabine produced a synergistic effect in growth inhibition and induction of apoptosis in DLBCL cells. This effect was time dependent, mediated via caspase-3 activation, and resulted in increased levels of acetylated histones. Synergy in inducing apoptosis was confirmed in patient-derived primary tumor cells treated with panobinostat and decitabine. Xenografting experiments confirmed the in vitro activity and tolerability of the combination. We analyzed the molecular basis for this synergistic effect by evaluating gene-expression and methylation patterns using microarrays, with validation by bisulfite sequencing. These analyses revealed differentially expressed genes and networks identified by each of the single treatment conditions and by the combination therapy to be unique with few overlapping genes. Among the genes uniquely altered by the combination of panobinostat and decitabine were VHL, TCEB1, WT1, and DIRAS3.

Indexed as

AcetylationAnimalsAntimetabolites, AntineoplasticApoptosisAzacitidineCell Line, TumorDecitabineDNA MethylationDrug SynergismEpigenesis, GeneticGene Expression Regulation, NeoplasticHistone Deacetylase InhibitorsHistonesHumansHydroxamic AcidsIndolesAntimetabolites, AntineoplasticAzacitidineDecitabineHistone Deacetylase InhibitorsHistonesHydroxamic AcidsIndolesPanobinostat

Identifiers

PMID21772049
PMCPMC3217353
OpenAlexW1988466148

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.