Evidence map›Paper›PMID 21771857›Full record

ArticleNucleic acids research2011

FRET analysis reveals distinct conformations of IN tetramers in the presence of viral DNA or LEDGF/p75.

Jacques J Kessl, Min Li, Michael Ignatov, Nikolozi Shkriabai, Jocelyn O Eidahl, Lei Feng, Karin Musier-Forsyth, Robert Craigie, Mamuka Kvaratskhelia

Abstract read
In one paragraph

Article in Nucleic acids research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed.

  1. HIV-1 Integrase Inhibition Activity by Spiroketals Derived fromPharmaceuticals (Basel, Switzerland) · 2023
    Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. Review
  7. Cellular and molecular mechanisms of HIV-1 integration targeting.Cellular and molecular life sciences : CMLS · 2018
    Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Sites of retroviral DNA integration: From basic research to clinical applications.Critical reviews in biochemistry and molecular biology · 2016
    Review
  14. Article
  15. HIV-1 integrase multimerization as a therapeutic target.Current topics in microbiology and immunology · 2015
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Jacques J KesslCenter for Retrovirus Research and Comprehensive Cancer Center, College of Pharmacy, The Ohio State University, Columbus, OH 43210, USA.
Min Li
Michael Ignatov
Nikolozi Shkriabai
Jocelyn O Eidahl
Lei Feng
Karin Musier-Forsyth
Robert Craigie
Mamuka Kvaratskhelia

Funding

Studies of nucleoprotein complexes involved in retroviral DNA integrationZIADK036169 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI CRAIGIE, ROBERT · 2009 to 2025
$22.5M
Development of the Gag/Lysyl tRNA synthetase interaction as a target for anti-HIVR01AI077387 · NIAID · SIR MORTIMER B. DAVIS JEWISH GEN HOSP · PI KLEIMAN, LAWRENCE · 2008 to 2012
$3.1M
Novel Assay for HIV-1 Integrase InhibitorsR01AI081581 · NIAID · OHIO STATE UNIVERSITY · PI KVARATSKHELIA, MAMUKA · 2010 to 2012
$1.1M
HIV-1 Integrase Structure and Function as a Therapeutic TargetK02AI077341 · NIAID · OHIO STATE UNIVERSITY · PI KVARATSKHELIA, MAMUKA · 2008 to 2012
$593k
Intramural NIH HHSNIAID NIH HHS AI062520NIAID NIH HHS AI077341NIAID NIH HHS AI077387NIAID NIH HHS AI081581
6 · The paper itself

Abstract

A tetramer of HIV-1 integrase (IN) stably associates with the viral DNA ends to form a fully functional concerted integration intermediate. LEDGF/p75, a key cellular binding partner of the lentiviral enzyme, also stabilizes a tetrameric form of IN. However, functional assays have indicated the importance of the order of viral DNA and LEDGF/p75 addition to IN for productive concerted integration. Here, we employed Förster Resonance Energy Transfer (FRET) to monitor assembly of individual IN subunits into tetramers in the presence of viral DNA and LEDGF/p75. The IN-viral DNA and IN-LEDGF/p75 complexes yielded significantly different FRET values suggesting two distinct IN conformations in these complexes. Furthermore, the order of addition experiments indicated that FRET for the preformed IN-viral DNA complex remained unchanged upon its subsequent binding to LEDGF/p75, whereas pre-incubation of LEDGF/p75 and IN followed by addition of viral DNA yielded FRET very similar to the IN-LEDGF/p75 complex. These findings provide new insights into the structural organization of IN subunits in functional concerted integration intermediates and suggest that differential multimerization of IN in the presence of various ligands could be exploited as a plausible therapeutic target for development of allosteric inhibitors.

Indexed as

DNA, ViralFluorescence Resonance Energy TransferHIV IntegraseIntercellular Signaling Peptides and ProteinsModels, MolecularProtein ConformationProtein SubunitsDNA, ViralHIV IntegraseIntercellular Signaling Peptides and Proteinslens epithelium-derived growth factorp31 integrase protein, Human immunodeficiency virus 1Protein Subunits

Identifiers

PMID21771857
PMCPMC3203615

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.