Evidence map›Paper›PMID 21768506›Full record

ArticleAntimicrobial agents and chemotherapy2011

Expression of an Mg2+-dependent HIV-1 RNase H construct for drug screening.

Richard V Farias, Deborah A Vargas, Andres E Castillo, Beatriz Valenzuela, Marie L Coté, Monica J Roth, Oscar Leon

Open access · greenAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Richard V FariasPrograma de Virología, Instituto de Ciencias Biomédicas, Facultad de Medicina Universidad de Chile, Independencia 1027, Santiago, Chile.
Deborah A Vargas
Andres E Castillo
Beatriz Valenzuela
Marie L Coté
Monica J Roth
Oscar Leon
University of Chile · CL

Funding

Integration of Murine Retroviral VectorsR01GM070837 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI ROTH, MONICA J. · 2005 to 2013
$2.1M
NIGMS NIH HHS R01 GM070837
6 · The paper itself

Abstract

A single polypeptide of the HIV-1 reverse transcriptase that reconstituted Mg(2+)-dependent RNase H activity has been made. Using molecular modeling, the construct was designed to encode the p51 subunit joined by a linker to the thumb (T), connection (C), and RNase H (R) domains of p66. This p51-G-TCR construct was purified from the soluble fraction of an Escherichia coli strain, MIC2067(DE3), lacking endogenous RNase HI and HII. The p51-G-TCR RNase H construct displayed Mg(2+)-dependent activity using a fluorescent nonspecific assay and showed the same cleavage pattern as HIV-1 reverse transcriptase (RT) on substrates that mimic the tRNA removal required for second-strand transfer reactions. The mutant E706Q (E478Q in RT) was purified under similar conditions and was not active. The RNase H of the p51-G-TCR RNase H construct and wild type HIV-1 RT had similar K(m)s for an RNA-DNA hybrid substrate and showed similar inhibition kinetics to two known inhibitors of the HIV-1 RT RNase H.

Indexed as

Amino Acid SequenceAnti-HIV AgentsBase SequenceDrug Evaluation, PreclinicalHIV-1HIV Reverse TranscriptaseMagnesiumModels, MolecularReverse Transcriptase InhibitorsRibonuclease HRNA, TransferSequence Analysis, RNAAnti-HIV AgentsHIV Reverse TranscriptaseMagnesiumreverse transcriptase, Human immunodeficiency virus 1Reverse Transcriptase InhibitorsRibonuclease HRNA, Transfer

Identifiers

PMID21768506
PMCPMC3186996
OpenAlexW2159796648

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.