ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2011
Genic microsatellite markers in Brassica rapa: development, characterization, mapping, and their utility in other cultivated and wild Brassica relatives.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.
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Who cites it
33 citing papers in PubMed.
- Genetic diversity and population structure in Ethiopian mustard (Brassica carinata A. Braun) revealed by high-density DArTSeq SNP genotyping.BMC genomics · 2025Article
- Integratedly analyzed quantitative proteomics with transcriptomics to discover key genes viaFrontiers in plant science · 2024Article
- QTL mapping for Fusarium wilt resistance based on the whole-genome resequencing and their association with functional genes in Raphanus sativus.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- Haploid and Doubled Haploid Plant Production in Brassica rapa L. subsp. pekinensis Via Microspore Culture.Methods in molecular biology (Clifton, N.J.) · 2021Article
- Article
- Population structure, genetic diversity and downy mildew resistance among Ocimum species germplasm.BMC plant biology · 2018Article
- Integrated analysis of leaf morphological and color traits in different populations of Chinese cabbage (Brassica rapa ssp. pekinensis).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- Article
- Quantitative Trait Loci for Morphological Traits and their Association with Functional Genes in Raphanus sativus.Frontiers in plant science · 2016Article
- Development of gene-based markers for use in construction of the chickpea (Cicer arietinum L.) genetic linkage map and identification of QTLs associated with seed weight and plant height.Molecular biology reports · 2015Article
- Linkage and regional association analysis reveal two new tightly-linked major-QTLs for pod number and seed number per pod in rapeseed (Brassica napus L.).Scientific reports · 2015Article
- Comparative transcriptome analysis of the petal degeneration mutant pdm in Chinese cabbage (Brassica campestris ssp. pekinensis) using RNA-Seq.Molecular genetics and genomics : MGG · 2015Article
- Quantitative trait loci mapping of partial resistance to Diamondback moth in cabbage (Brassica oleracea L).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2015Article
- Characterization and Development of EST-SSRs by Deep Transcriptome Sequencing in Chinese Cabbage (Brassica rapa L. ssp. pekinensis).International journal of genomics · 2015Article
- Article
- Tetralocular ovary and high silique width in yellow sarson lines of Brassica rapa (subspecies trilocularis) are due to a mutation in Bra034340 gene, a homologue of CLAVATA3 in Arabidopsis.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2014Article
- Construction of a genetic map based on high-throughput SNP genotyping and genetic mapping of a TuMV resistance locus in Brassica rapa.Molecular genetics and genomics : MGG · 2014Article
- Genetic linkage mapping and transmission ratio distortion in a three-generation four-founder population of Panicum virgatum (L.).G3 (Bethesda, Md.) · 2014Article
- Physiological and genetic analysis of CO2-induced breakdown of self-incompatibility in Brassica rapa.Journal of experimental botany · 2014Article
- Transcriptome sequencing of two parental lines of cabbage (Brassica oleracea L. var. capitata L.) and construction of an EST-based genetic map.BMC genomics · 2014Article
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Authors and funding
9 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Genic microsatellite markers, also known as functional markers, are preferred over anonymous markers as they reveal the variation in transcribed genes among individuals. In this study, we developed a total of 707 expressed sequence tag-derived simple sequence repeat markers (EST-SSRs) and used for development of a high-density integrated map using four individual mapping populations of B. rapa. This map contains a total of 1426 markers, consisting of 306 EST-SSRs, 153 intron polymorphic markers, 395 bacterial artificial chromosome-derived SSRs (BAC-SSRs), and 572 public SSRs and other markers covering a total distance of 1245.9 cM of the B. rapa genome. Analysis of allelic diversity in 24 B. rapa germplasm using 234 mapped EST-SSR markers showed amplification of 2 alleles by majority of EST-SSRs, although amplification of alleles ranging from 2 to 8 was found. Transferability analysis of 167 EST-SSRs in 35 species belonging to cultivated and wild brassica relatives showed 42.51% (Sysimprium leteum) to 100% (B. carinata, B. juncea, and B. napus) amplification. Our newly developed EST-SSRs and high-density linkage map based on highly transferable genic markers would facilitate the molecular mapping of quantitative trait loci and the positional cloning of specific genes, in addition to marker-assisted selection and comparative genomic studies of B. rapa with other related species.
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