Evidence map›Paper›PMID 21767478›Full record

ArticleBiophysical journal2011

Dynamic instability of a growing adsorbed polymorphic filament.

Stefano Zapperi, L Mahadevan

Abstract read
In one paragraph

Article in Biophysical journal, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Stefano ZapperiConsiglio Nazionale delle Ricerche-Istituto per l'Energetica e le Interfasi, Milan, Italy.
L Mahadevan

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The intermittent transition between slow growth and rapid shrinkage in polymeric assemblies is termed "dynamic instability", a feature observed in a variety of biochemically distinct assemblies including microtubules, actin, and their bacterial analogs. The existence of this labile phase of a polymer has many functional consequences in cytoskeletal dynamics, and its repeated appearance suggests that it is relatively easy to evolve. Here, we consider the minimal ingredients for the existence of dynamic instability by considering a single polymorphic filament that grows by binding to a substrate, undergoes a conformation change, and may unbind as a consequence of the residual strains induced by this change. We identify two parameters that control the phase space of possibilities for the filament: a structural mechanical parameter that characterizes the ratio of the bond strengths along the filament to those with the substrate (or equivalently the ratio of longitudinal to lateral interactions in an assembly), and a kinetic parameter that characterizes the ratio of timescales for growth and conformation change. In the deterministic limit, these parameters serve to demarcate a region of uninterrupted growth from that of collapse. However, in the presence of disorder in either the structural or the kinetic parameter the growth and collapse phases can coexist where the filament can grow slowly, shrink rapidly, and transition between these phases, thus exhibiting dynamic instability. We exhibit the window for the existence of dynamic instability in a phase diagram that allows us to quantify the evolvability of this labile phase.

Indexed as

AdsorptionKineticsMicrotubulesModels, BiologicalMolecular ConformationPhase TransitionTemperature

Identifiers

PMID21767478
PMCPMC3136764

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.