Evidence map›Paper›PMID 21767470›Full record

ArticleJournal of inorganic biochemistry2011

NMR studies of nitrophorin distal pocket side chain effects on the heme orientation and seating of NP2 as compared to NP1.

Tatiana K Shokhireva, Robert E Berry, Hongjun Zhang, Nikolai V Shokhirev, F Ann Walker

Abstract read
In one paragraph

Article in Journal of inorganic biochemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. NMR investigations of nitrophorin 2 belt side chain effects on heme orientation and seating of native N-terminus NP2 and NP2(D1A).Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2014
    Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Tatiana K ShokhirevaDepartment of Chemistry and Biochemistry, The University of Arizona, Tucson, AZ 85721-0041, USA. tatjana@email.arizona.edu
Robert E Berry
Hongjun Zhang
Nikolai V Shokhirev
F Ann Walker
University of Arizona · US

Funding

NITRIC OXIDE INTERACTION WITH INSECT NITROPHORINSR01HL054826 · NHLBI · UNIVERSITY OF ARIZONA · PI WALKER, FRANCES ANN · 1995 to 2012
$3.5M
NHLBI NIH HHS HL054826NHLBI NIH HHS R01 HL054826
6 · The paper itself

Abstract

The nitrophorins (NP) of the adult blood-sucking insect Rhodnius prolixus fall into two pairs based on sequence identity (NP1,4 (90%) and NP2,3 (79%)), which differ significantly in the size of side chains of residues which contact the heme. These residues include those in the distal pocket of NP2 (I120) and NP1 (T121) and the "belt" that surrounds the heme of NP2 (S40, F42), and NP1(A42, L44). To determine the importance of these residues and others conserved or very similar for the two pairs, including L122(123), L132(133), appropriate mutants of NP2 and NP1 have been prepared and studied by (1)H NMR spectroscopy. Wild-type NP2 has heme orientation ratio (A:B) of 1:8 at equilibrium, while wild-type NP1 has A:B ~1:1 at equilibrium. Another difference between NP2 and NP1 is in the heme seating with regard to His57(59). It is found that among the distal pocket residues investigated, the residue most responsible for heme orientation and seating is I120(T121). F42(L44) and L106(F107) may also be important, but must be investigated in greater detail.

Indexed as

Amino Acid SequenceAnimalsAnticoagulantsCloning, MolecularElectron Spin Resonance SpectroscopyEscherichia coliHemeHemeproteinsInsect VectorsIsoleucineKineticsLigandsMagnetic Resonance SpectroscopyModels, MolecularMolecular Sequence DataRecombinant ProteinsAnticoagulantsHemeHemeproteinsIsoleucineLigandsnitrophorinRecombinant ProteinsSalivary Proteins and Peptides

Identifiers

PMID21767470
PMCPMC3155619
OpenAlexW1992600946

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.