Evidence map›Paper›PMID 21765953›Full record

ArticlePloS one2011

HIV-2 integrase variation in integrase inhibitor-naïve adults in Senegal, West Africa.

Geoffrey S Gottlieb, Robert A Smith, Ndeye Mery Dia Badiane, Selly Ba, Stephen E Hawes, Macoumba Toure, Alison K Starling, Fatou Traore, Fatima Sall, Stephen L Cherne and 9 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it, 29 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. HIV-2 Drug Resistance Genotyping from Dried Blood Spots.Journal of clinical microbiology · 2020
    Article
  4. The first case of HIV-2 in Scotland.Access microbiology · 2020
    Article
  5. Article
  6. Detection and differentiation of HIV-2 using the point-of-care Alere q HIV-1/2 Detect nucleic acid test.Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology · 2017
    Article
  7. Article
  8. Review
  9. Article
  10. Genetic Consequences of Antiviral Therapy on HIV-1.Computational and mathematical methods in medicine · 2015
    Review
  11. Article
  12. Article
  13. Validation for clinical use of a novel HIV-2 plasma RNA viral load assay using the Abbott m2000 platform.Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology · 2012
    Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 3 institutions in 2 countries.

Geoffrey S GottliebDepartment of Medicine, School of Medicine, University of Washington, Seattle, Washington, United States of America. gottlieb@uw.edu
Robert A Smith
Ndeye Mery Dia Badiane
Selly Ba
Stephen E Hawes
Macoumba Toure
Alison K Starling
Fatou Traore
Fatima Sall
Stephen L Cherne
Joshua Stern
Kim G Wong
Paul Lu
Moon Kim
Dana N Raugi
Airin Lam
James I Mullins
Nancy B Kiviat
Papa Salif Sow for the UW-Dakar HIV-2 Study Group
University of Washington · USCentre Hospitalier National Universitaire de Fann · SNCheikh Anta Diop University · SN

Funding

Antiretroviral Therapy for HIV-2 Infection in SenegalR01AI060466 · NIAID · UNIVERSITY OF WASHINGTON · PI GOTTLIEB, GEOFFREY SCOTT · 2005 to 2014
$6.5M
NIAID NIH HHS 2R01- AI060466NIAID NIH HHS R01 AI060466
6 · The paper itself

Abstract

backgroundAntiretroviral therapy for HIV-2 infection is hampered by intrinsic resistance to many of the drugs used to treat HIV-1. Limited studies suggest that the integrase inhibitors (INIs) raltegravir and elvitegravir have potent activity against HIV-2 in culture and in infected patients. There is a paucity of data on genotypic variation in HIV-2 integrase that might confer intrinsic or transmitted INI resistance.

methodsWe PCR amplified and analyzed 122 HIV-2 integrase consensus sequences from 39 HIV-2-infected, INI-naive adults in Senegal, West Africa. We assessed genetic variation and canonical mutations known to confer INI-resistance in HIV-1.

resultsNo amino acid-altering mutations were detected at sites known to be pivotal for INI resistance in HIV-1 (integrase positions 143, 148 and 155). Polymorphisms at several other HIV-1 INI resistance-associated sites were detected at positions 72, 95, 125, 154, 165, 201, 203, and 263 of the HIV-2 integrase protein.

conclusionEmerging genotypic and phenotypic data suggest that HIV-2 is susceptible to the new class of HIV integrase inhibitors. We hypothesize that intrinsic HIV-2 integrase variation at "secondary" HIV-1 INI-resistance sites may affect the genetic barrier to HIV-2 INI resistance. Further studies will be needed to assess INI efficacy as part of combination antiretroviral therapy in HIV-2-infected patients.

Indexed as

AdultBase SequenceDrug Resistance, ViralFemaleGenetic VariationHIV-2HIV IntegraseHIV Integrase InhibitorsHumansMaleMiddle AgedMolecular Sequence DataPhylogenySenegalYoung AdultHIV IntegraseHIV Integrase Inhibitors

Identifiers

PMID21765953
PMCPMC3134476
OpenAlexW2170947066

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.