Evidence map›Paper›PMID 21765814›Full record

ArticlePLoS pathogens2011

A structural model for binding of the serine-rich repeat adhesin GspB to host carbohydrate receptors.

Tasia M Pyburn, Barbara A Bensing, Yan Q Xiong, Bruce J Melancon, Thomas M Tomasiak, Nicholas J Ward, Victoria Yankovskaya, Kevin M Oliver, Gary Cecchini, Gary A Sulikowski and 3 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
7.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 85 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Review
  5. Crystal structure of the long Rib domain of the LPXTG-anchored surface protein from Limosilactobacillus reuteri.Acta crystallographica. Section F, Structural biology communications · 2024
    Article
  6. Article
  7. Article
  8. TapA acts as specific chaperone in TasA filament formation by strand complementation.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  9. Article
  10. Article
  11. Frontiers in cellular and infection microbiology · 2022
    Article
  12. Article
  13. Article
  14. Article
  15. Tandem sialoglycan-binding modules in aThe Journal of biological chemistry · 2020
    Article
  16. Article
  17. Review
  18. Streptococcus oralis subsp.Infection and immunity · 2019
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

13 authors at 6 institutions in 1 country.

Tasia M PyburnDepartment of Pharmacology, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.
Barbara A Bensing
Yan Q Xiong
Bruce J Melancon
Thomas M Tomasiak
Nicholas J Ward
Victoria Yankovskaya
Kevin M Oliver
Gary Cecchini
Gary A Sulikowski
Matthew J Tyska
Paul M Sullam
T M Iverson
San Francisco VA Medical Center · USVanderbilt Health · USVanderbilt University Medical Center · USVanderbilt University · USUCLA Medical Center · USUniversity of California, San Francisco · US

Funding

VANDERBILT UNIVERSITY CTSA FOR PEDIATRIC RESEARCHUL1RR024975 · NCRR · VANDERBILT UNIVERSITY · PI BERNARD, GORDON RAPHAEL · 2007 to 2011
$45.7M
Structure/Function of Complex ll OxidoreductasesR01GM061606 · NIGMS · NORTHERN CALIFORNIA INSTITUTE RES &EDUC · PI CECCHINI, GARY, IVERSON, T M · 2001 to 2022
$9.1M
Chemistry-Biology Interface Training GrantT32GM065086 · NIGMS · VANDERBILT UNIVERSITY · PI BACHMANN, BRIAN O, SULIKOWSKI, GARY ALLEN · 2002 to 2022
$7.0M
STREPTOCOCCAL PLATELET BINDING AND ENDOCARDITISR01AI041513 · NIAID · NORTHERN CALIFORNIA INSTITUTE RES &EDUC · PI SULLAM, PAUL M. · 1997 to 2019
$5.6M
Regulation of Brush Border Structure by Myosin-1aR01DK075555 · NIDDK · VANDERBILT UNIVERSITY · PI TYSKA, MATTHEW J · 2007 to 2016
$2.7M
Prophage-Encoded Binding of S. mitis to Human PlateletsR01AI057433 · NIAID · NORTHERN CALIFORNIA INSTITUTE RES &EDUC · PI SULLAM, PAUL M. · 2004 to 2008
$1.8M
Integrative Training in Therapeutic DiscoveryT90DA022873 · NIDA · VANDERBILT UNIVERSITY · PI MARNETT, LAWRENCE J. · 2006 to 2009
$1.3M
Complexities of complex II: A versatile architecture for respirationR01GM079419 · NIGMS · VANDERBILT UNIVERSITY · PI IVERSON, T M · 2007 to 2011
$1.3M
The interaction between outer membrane porins and toll-like receptorsR21AI079558 · NIAID · VANDERBILT UNIVERSITY · PI IVERSON, T M · 2010 to 2011
$423k
THE ROLE OF ACETYLATION IN MITOCHONDRIAL FUNCTIONI01BX001077 · VA · VETERANS AFFAIRS MED CTR SAN FRANCISCO · PI CECCHINI, GARY · 2011 to 2014
–
BLRD VA I01 BX001077NCRR NIH HHS UL1 RR024975NIAID NIH HHS AI041513NIAID NIH HHS AI057433NIAID NIH HHS AI079558NIAID NIH HHS R01 AI041513NIAID NIH HHS R01 AI057433NIAID NIH HHS R21 AI079558NIDA NIH HHS T90 DA022873NIDDK NIH HHS DK075555NIDDK NIH HHS R01 DK075555NIGMS NIH HHS GM079419NIGMS NIH HHS GM61606NIGMS NIH HHS R01 GM061606NIGMS NIH HHS R01 GM079419NIGMS NIH HHS T32 GM065086NIGMS NIH HHS T32 GM65086
6 · The paper itself

Abstract

GspB is a serine-rich repeat (SRR) adhesin of Streptococcus gordonii that mediates binding of this organism to human platelets via its interaction with sialyl-T antigen on the receptor GPIbα. This interaction appears to be a major virulence determinant in the pathogenesis of infective endocarditis. To address the mechanism by which GspB recognizes its carbohydrate ligand, we determined the high-resolution x-ray crystal structure of the GspB binding region (GspB(BR)), both alone and in complex with a disaccharide precursor to sialyl-T antigen. Analysis of the GspB(BR) structure revealed that it is comprised of three independently folded subdomains or modules: 1) an Ig-fold resembling a CnaA domain from prokaryotic pathogens; 2) a second Ig-fold resembling the binding region of mammalian Siglecs; 3) a subdomain of unique fold. The disaccharide was found to bind in a pocket within the Siglec subdomain, but at a site distinct from that observed in mammalian Siglecs. Confirming the biological relevance of this binding pocket, we produced three isogenic variants of S. gordonii, each containing a single point mutation of a residue lining this binding pocket. These variants have reduced binding to carbohydrates of GPIbα. Further examination of purified GspB(BR)-R484E showed reduced binding to sialyl-T antigen while S. gordonii harboring this mutation did not efficiently bind platelets and showed a significant reduction in virulence, as measured by an animal model of endocarditis. Analysis of other SRR proteins revealed that the predicted binding regions of these adhesins also had a modular organization, with those known to bind carbohydrate receptors having modules homologous to the Siglec and Unique subdomains of GspB(BR). This suggests that the binding specificity of the SRR family of adhesins is determined by the type and organization of discrete modules within the binding domains, which may affect the tropism of organisms for different tissues.

Indexed as

Adhesins, BacterialAnimalsBacterial ProteinsBinding SitesBlood PlateletsEndocarditis, BacterialFemaleHumansLectinsMicroscopy, FluorescenceMucinsMutagenesis, Site-DirectedPlatelet Glycoprotein GPIb-IX ComplexPoint MutationProtein BindingProtein Structure, SecondaryAdhesins, BacterialBacterial ProteinsglycocalicinLectinsMucinsPlatelet Glycoprotein GPIb-IX ComplexSerineSialic Acid Binding Immunoglobulin-like Lectinssialosyl-T antigen

Identifiers

PMID21765814
PMCPMC3131266
OpenAlexW2067583120

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.