Evidence map›Paper›PMID 21764950›Full record

ArticleApplied and environmental microbiology2011

Phylogenetic analysis of Bacillus subtilis strains applicable to natto (fermented soybean) production.

Yuji Kubo, Alejandro P Rooney, Yoshiki Tsukakoshi, Rikio Nakagawa, Hiromasa Hasegawa, Keitarou Kimura

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed, 2 pooled it
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 2 syntheses or guidelines pooled it, 117 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
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  14. Discrimination ofJournal of microbiology and biotechnology · 2022
    Article
  15. Article
  16. Preclinical Safety Assessment ofMicroorganisms · 2022
    Article
  17. Nutritional Health Perspective of Natto: A Critical Review.Biochemistry research international · 2022
    Review
  18. Biocontrol potential ofFrontiers in microbiology · 2022
    Article
  19. Metagenomic-Metabolomic Mining ofFrontiers in microbiology · 2022
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Yuji KuboIndustrial Technology Institute of Ibaraki Prefecture, Nagaoka, Ibarakimachi, Ibaraki, Japan.
Alejandro P Rooney
Yoshiki Tsukakoshi
Rikio Nakagawa
Hiromasa Hasegawa
Keitarou Kimura
Food Research Institute · JPIndustrial Technology Center of Okayama Prefecture · JPAgricultural Research Service · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Spore-forming Bacillus strains that produce extracellular poly-γ-glutamic acid were screened for their application to natto (fermented soybean food) fermentation. Among the 424 strains, including Bacillus subtilis and B. amyloliquefaciens, which we isolated from rice straw, 59 were capable of fermenting natto. Biotin auxotrophism was tightly linked to natto fermentation. A multilocus nucleotide sequence of six genes (rpoB, purH, gyrA, groEL, polC, and 16S rRNA) was used for phylogenetic analysis, and amplified fragment length polymorphism (AFLP) analysis was also conducted on the natto-fermenting strains. The ability to ferment natto was inferred from the two principal components of the AFLP banding pattern, and natto-fermenting strains formed a tight cluster within the B. subtilis subsp. subtilis group.

Indexed as

PhylogenyAmplified Fragment Length Polymorphism AnalysisBacillus subtilisBiotinDNA, BacterialFermentationMolecular Sequence DataMultilocus Sequence TypingOryzaPlant StemsSequence Analysis, DNASoy FoodsBiotinDNA, Bacterial

Identifiers

PMID21764950
PMCPMC3187134
OpenAlexW1985050763

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.