Evidence map›Paper›PMID 21764924›Full record

ArticleJournal of bacteriology2011

Ligand responses of Vfr, the virulence factor regulator from Pseudomonas aeruginosa.

Jose Serate, Gary P Roberts, Otto Berg, Hwan Youn

Open access · greenAbstract readComparative Study
In one paragraph

Article in Journal of bacteriology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.0field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
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  4. Review
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  6. Clp is a "busy" transcription factor in the bacterial warrior,Computational and structural biotechnology journal · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Jose SerateDepartment of Bacteriology, University of Wisconsin - Madison, Madison, Wisconsin 53706, USA.
Gary P Roberts
Otto Berg
Hwan Youn
California State University, Fresno · USUniversity of Wisconsin–Madison · US

Funding

The Molecular Basis for CO-Sensing and ResponseR01GM053228 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI ROBERTS, GARY PAUL · 1995 to 2010
$3.9M
NIGMS NIH HHS GM53228NIGMS NIH HHS R01 GM053228
6 · The paper itself

Abstract

Vfr, a transcription factor homologous to the Escherichia coli cyclic AMP (cAMP) receptor protein (CRP), regulates many aspects of virulence in Pseudomonas aeruginosa. Vfr, like CRP, binds to cAMP and then recognizes its target DNA and activates transcription. Here we report that Vfr has important functional differences from CRP in terms of ligand sensing and response. First, Vfr has a significantly higher cAMP affinity than does CRP, which might explain the mysteriously unidirectional functional complementation between the two proteins (S. E. H. West et al., J. Bacteriol. 176:7532-7542, 1994). Second, Vfr is activated by both cAMP and cGMP, while CRP is specific to cAMP. Mutagenic analyses show that Thr133 (analogous to Ser128 of CRP) is the key residue for both of these distinct Vfr properties. On the other hand, substitutions that cause cAMP-independent activity in Vfr are similar to those seen in CRP, suggesting that a common cAMP activation mechanism is present. In the course of these analyses, we found a remarkable class of Vfr variants that have completely reversed the regulatory logic of the protein: they are active in DNA binding without cAMP and are strongly inhibited by cAMP. The physiological impact of Vfr's ligand sensing and response is discussed, as is a plausible basis for the fundamental change in protein allostery in the novel group of Vfr variants.

Indexed as

Gene Expression Regulation, BacterialBacterial ProteinsCyclic AMPCyclic AMP Receptor ProteinCyclic GMPDNA Mutational AnalysisKineticsProtein BindingPseudomonas aeruginosaVirulence FactorsBacterial ProteinsCyclic AMPCyclic AMP Receptor ProteinCyclic GMPVfr protein, Pseudomonas aeruginosaVirulence Factors

Identifiers

PMID21764924
PMCPMC3165676
OpenAlexW2141881066

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.