Evidence map›Paper›PMID 21764853›Full record

ArticleGenes & development2011

Post-transcription initiation function of the ubiquitous SAGA complex in tissue-specific gene activation.

Vikki M Weake, Jamie O Dyer, Christopher Seidel, Andrew Box, Selene K Swanson, Allison Peak, Laurence Florens, Michael P Washburn, Susan M Abmayr, Jerry L Workman

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 72 citations in OpenAlex.

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  7. DOT1L complex regulates transcriptional initiation in human erythroleukemic cells.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
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  9. Review
  10. Epigenetic Regulation of ALS and CMT: A Lesson fromInternational journal of molecular sciences · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Vikki M WeakeStowers Institute for Medical Research, Kansas City, Missouri 64110, USA.
Jamie O Dyer
Christopher Seidel
Andrew Box
Selene K Swanson
Allison Peak
Laurence Florens
Michael P Washburn
Susan M Abmayr
Jerry L Workman
Stowers Institute for Medical Research · USUniversity of Kansas Medical Center · US

Funding

Mechanisms of Transcriptional Regulation in ChromatinR37GM047867 · NIGMS · STOWERS INSTITUTE FOR MEDICAL RESEARCH · PI WORKMAN, JERRY L · 2001 to 2010
$3.4M
NIGMS NIH HHS R37 GM047867NIGMS NIH HHS R37GM047867-18S1
6 · The paper itself

Abstract

The Spt-Ada-Gcn5-acetyltransferase (SAGA) complex was discovered from Saccharomyces cerevisiae and has been well characterized as an important transcriptional coactivator that interacts both with sequence-specific transcription factors and the TATA-binding protein TBP. SAGA contains a histone acetyltransferase and a ubiquitin protease. In metazoans, SAGA is essential for development, yet little is known about the function of SAGA in differentiating tissue. We analyzed the composition, interacting proteins, and genomic distribution of SAGA in muscle and neuronal tissue of late stage Drosophila melanogaster embryos. The subunit composition of SAGA was the same in each tissue; however, SAGA was associated with considerably more transcription factors in muscle compared with neurons. Consistent with this finding, SAGA was found to occupy more genes specifically in muscle than in neurons. Strikingly, SAGA occupancy was not limited to enhancers and promoters but primarily colocalized with RNA polymerase II within transcribed sequences. SAGA binding peaks at the site of RNA polymerase pausing at the 5' end of transcribed sequences. In addition, many tissue-specific SAGA-bound genes required its ubiquitin protease activity for full expression. These data indicate that in metazoans SAGA plays a prominent post-transcription initiation role in tissue-specific gene expression.

Indexed as

Transcriptional ActivationAcetylationAnimalsDNA Polymerase IIDrosophila melanogasterDrosophila ProteinsHistone AcetyltransferasesHistonesMusclesNeuronsOpen Reading FramesPeptide HydrolasesPromoter Regions, GeneticProtein TransportTrans-ActivatorsTranscription FactorsAda2a protein, DrosophilaDNA Polymerase IIDrosophila ProteinsHistone AcetyltransferasesHistonesPeptide HydrolasesTrans-ActivatorsTranscription FactorsUbiquitin

Identifiers

PMID21764853
PMCPMC3143940
OpenAlexW2154580523

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.