Evidence map›Paper›PMID 21762392›Full record

ArticleMolecular ecology2011

Niche segregation and genetic structure of Campylobacter jejuni populations from wild and agricultural host species.

Samuel K Sheppard, Frances M Colles, Noel D McCarthy, Norval J C Strachan, Iain D Ogden, Ken J Forbes, John F Dallas, Martin C J Maiden

Abstract read
In one paragraph

Article in Molecular ecology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed, 1 pooled it
11.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 1 synthesis or guideline pooled it, 113 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. AcceleratingProceedings of the National Academy of Sciences of the United States of America · 2026
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  7. Genomic insights and survival dynamics ofFrontiers in microbiology · 2026
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  9. Draft genome sequences of 58 isolates ofMicrobiology resource announcements · 2025
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  14. Frontiers in cellular and infection microbiology · 2024
    Article
  15. Evidence of potentialMicrobial genomics · 2023
    Article
  16. Article
  17. Antimicrobial Resistance ofMicroorganisms · 2023
    Article
  18. Article
  19. Whole-genome-based characterization ofMicrobial genomics · 2023
    Article
  20. Article

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Samuel K SheppardDepartment of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3SY, UK. Samuel.sheppard@zoo.ox.ac.uk
Frances M Colles
Noel D McCarthy
Norval J C Strachan
Iain D Ogden
Ken J Forbes
John F Dallas
Martin C J Maiden
University of Aberdeen · GBUniversity of Oxford · GB

Funding

Biotechnology and Biological Sciences Research CouncilWellcome Trust 087622
6 · The paper itself

Abstract

Bacterial populations can display high levels of genetic structuring but the forces that influence this are incompletely understood. Here, by combining modelling approaches with multilocus sequence data for the zoonotic pathogen Campylobacter, we investigated how ecological factors such as niche (host) separation relate to population structure. We analysed seven housekeeping genes from published C. jejuni and C. coli isolate collections from a range of food and wild animal sources as well as abiotic environments. By reconstructing genetic structure and the patterns of ancestry, we quantified C. jejuni host association, inferred ancestral populations, investigated genetic admixture in different hosts and determined the host origin of recombinant C. jejuni alleles found in hybrid C. coli lineages. Phylogenetically distinct C. jejuni lineages were associated with phylogenetically distinct wild birds. However, in the farm environment, phylogenetically distant host animals shared several C. jejuni lineages that could not be segregated according to host origin using these analyses. Furthermore, of the introgressed C. jejuni alleles found in C. coli lineages, 73% were attributed to genotypes associated with food animals. Our results are consistent with an evolutionary scenario where distinct Campylobacter lineages are associated with different host species but the ecological factors that maintain this are different in domestic animals such that phylogenetically distant animals can harbour closely related strains.

Indexed as

AgricultureAllelesAnimalsAnimals, DomesticBirdsCampylobacter coliCampylobacter jejuniChickensChimeraCluster AnalysisDucksGeeseGenetic VariationGenotypeHost-Pathogen InteractionsPhylogeny

Identifiers

PMID21762392
PMCPMC3985062
OpenAlexW2096682528

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.