Evidence map›Paper›PMID 21761484›Full record

ArticleDevelopmental dynamics : an official publication of the American Association of Anatomists2011

Zebrafish nephrogenesis involves dynamic spatiotemporal expression changes in renal progenitors and essential signals from retinoic acid and irx3b.

Rebecca A Wingert, Alan J Davidson

Open access · greenAbstract read
In one paragraph

Article in Developmental dynamics : an official publication of the American Association of Anatomists, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 114 citations in OpenAlex.

  1. Review
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  5. Comparative analysis ofbioRxiv : the preprint server for biology · 2025
    Article
  6. Article
  7. Review
  8. Frontiers in cell and developmental biology · 2024
    Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Principles of Zebrafish Nephron Segment Development.Journal of developmental biology · 2023
    Review
  14. Review
  15. Article
  16. Review
  17. Biomedicines · 2022
    Article
  18. Biomedicines · 2022
    Article
  19. Article
  20. Article

14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Rebecca A WingertCenter for Regenerative Medicine, Massachusetts General Hospital, Boston, Massachusetts, USA.
Alan J Davidson
Harvard University · US

Funding

Role of the cdx homeobox genes in the regulation of wt1 and nephron developmentR01DK077186 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI DAVIDSON, ALAN J · 2008 to 2010
$1.1M
Genetic Analysis of Pathways Controlling Nephron Segmentation Using the ZebrafishK01DK083512 · NIDDK · UNIVERSITY OF NOTRE DAME · PI WINGERT, REBECCA ANN · 2009 to 2013
$644k
NIDDK NIH HHS K01 DK083512NIDDK NIH HHS K01DK083512NIDDK NIH HHS R01 DK077186NIDDK NIH HHS R01DK077186
6 · The paper itself

Abstract

Kidney nephrons are composed of proximal and distal tubule segments that perform unique roles in excretion. The developmental pathways that establish nephron segment identities from renal progenitors are poorly understood. Here, we used the zebrafish pronephros to study nephron segmentation. We found that zebrafish nephron progenitors undergo elaborate spatiotemporal expression changes of many genes before adopting a segment fate. Initially, two domains of nephron progenitors are established, then are subdivided and demarcate individual nephron segments. Using genetic and chemical genetic models of retinoic acid (RA) deficiency, we discovered that RA modulates rostral progenitor formation. To delineate downstream pathways, we knocked down the irx3b transcription factor and found it regulates proximal tubule segment size and distal segment differentiation. Our results suggest a model whereby RA patterns the early field of nephron progenitors, with subsequent factors like irx3b acting to refine later progenitor subdomains and ensure activation of segment-specific gene programs.

Indexed as

ZebrafishAnimalsBody PatterningCell DifferentiationGene Expression Regulation, DevelopmentalHomeodomain ProteinsMesodermNephronsOrganogenesisPronephrosSignal TransductionStem CellsTranscription FactorsTretinoinZebrafish ProteinsHomeodomain Proteinsirx3b protein, Danio rerioTranscription FactorsTretinoinZebrafish Proteins

Identifiers

PMID21761484
PMCPMC3682937
OpenAlexW2027035650

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.