Evidence map›Paper›PMID 21760891›Full record

ArticlePloS one2011

Adoption of an "open" envelope conformation facilitating CD4 binding and structural remodeling precedes coreceptor switch in R5 SHIV-infected macaques.

Ke Zhuang, Andres Finzi, Silvana Tasca, Madina Shakirzyanova, Heather Knight, Susan Westmoreland, Joseph Sodroski, Cecilia Cheng-Mayer

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.7field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
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  5. Review
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  13. The HIV-1 env protein: a coat of many colors.Current HIV/AIDS reports · 2012
    Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Ke ZhuangAaron Diamond AIDS Research Center, New York, New York, United States of America.
Andres Finzi
Silvana Tasca
Madina Shakirzyanova
Heather Knight
Susan Westmoreland
Joseph Sodroski
Cecilia Cheng-Mayer
Aaron Diamond AIDS Research Center · USHarvard University · USDana-Farber Cancer Institute · USNew England Biolabs (United States) · US

Funding

HIV-1 ENVELOPE GLYCOPROTEINSR37AI024755 · NIAID · DANA-FARBER CANCER INSTITUTE · PI SODROSKI, JOSEPH G · 1996 to 2015
$11.6M
TRANSMISSION &PATHOGENESIS OF X4 &R5 SHIVSR01AI046980 · NIAID · AARON DIAMOND AIDS RESEARCH CENTER · PI CHENG-MAYER, CECILIA C · 2000 to 2009
$6.0M
Simian Immunodeficiency VIrus PathogenesisR37AI041945 · NIAID · AARON DIAMOND AIDS RESEARCH CENTER · PI CHENG-MAYER, CECILIA C · 2001 to 2010
$5.0M
Medical Research CouncilNIAID NIH HHS R01 AI046980NIAID NIH HHS R01AI46980NIAID NIH HHS R37 AI024755NIAID NIH HHS R37 AI041945NIAID NIH HHS R37AI41945
6 · The paper itself

Abstract

A change in coreceptor preference from CCR5 to CXCR4 towards the end stage disease in some HIV-1 infected individuals has been well documented, but the reasons and mechanisms for this tropism switch remain elusive. It has been suggested that envelope structural constraints in accommodating amino acid changes required for CXCR4 usage is an obstacle to tropism switch, limiting the rate and pathways available for HIV-1 coreceptor switching. The present study was initiated in two R5 SHIV(SF162P3N)-infected rapid progressor macaques with coreceptor switch to test the hypothesis that an early step in the evolution of tropism switch is the adoption of a less constrained and more "open" envelope conformation for better CD4 usage, allowing greater structural flexibility to accommodate further mutational changes that confer CXCR4 utilization. We show that, prior to the time of coreceptor switch, R5 viruses in both macaques evolved to become increasingly sCD4-sensitive, suggestive of enhanced exposure of the CD4 binding site and an "open" envelope conformation, and this correlated with better gp120 binding to CD4 and with more efficient infection of CD4(low) cells such as primary macrophages. Moreover, significant changes in neutralization sensitivity to agents and antibodies directed against functional domains of gp120 and gp41 were seen for R5 viruses close to the time of X4 emergence, consistent with global changes in envelope configuration and structural plasticity. These observations in a simian model of R5-to-X4 evolution provide a mechanistic basis for the HIV-1 coreceptor switch.

Indexed as

AnimalsCD4 AntigensCD4-Positive T-LymphocytesDisease ProgressionHeLa CellsHIV Envelope Protein gp120HumansMacacaMacrophagesNeutralization TestsProtein BindingReceptors, CCR5Receptors, CXCR4Simian Acquired Immunodeficiency SyndromeSimian Immunodeficiency VirusSolubilityCD4 AntigensHIV Envelope Protein gp120Receptors, CCR5Receptors, CXCR4

Identifiers

PMID21760891
PMCPMC3132741
OpenAlexW2009680828

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.