Evidence map›Paper›PMID 21757687›Full record

ArticleThe Journal of biological chemistry2011

A role for prolyl 3-hydroxylase 2 in post-translational modification of fibril-forming collagens.

Russell J Fernandes, Alex W Farnand, Geoffrey R Traeger, Mary Ann Weis, David R Eyre

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 48 citations in OpenAlex.

  1. Review
  2. The Impact of Ageing on Fibrillar Collagens.Sub-cellular biochemistry · 2026
    Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Prolyl 3-Hydroxylase 2 Is a Molecular Player of Angiogenesis.International journal of molecular sciences · 2021
    Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. The development of a mature collagen network in cartilage from human bone marrow stem cells in Transwell culture.Matrix biology : journal of the International Society for Matrix Biology · 2016
    Article
  15. Article
  16. Article
  17. Biological role of prolyl 3-hydroxylation in type IV collagen.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Russell J FernandesOrthopaedic Research Laboratories, Department of Orthopaedics and Sports Medicine, University of Washington, Seattle, Washington 98195-6500. Electronic address: rjf@u.washington.edu.
Alex W FarnandOrthopaedic Research Laboratories, Department of Orthopaedics and Sports Medicine, University of Washington, Seattle, Washington 98195-6500.
Geoffrey R TraegerOrthopaedic Research Laboratories, Department of Orthopaedics and Sports Medicine, University of Washington, Seattle, Washington 98195-6500.
Mary Ann WeisOrthopaedic Research Laboratories, Department of Orthopaedics and Sports Medicine, University of Washington, Seattle, Washington 98195-6500.
David R EyreOrthopaedic Research Laboratories, Department of Orthopaedics and Sports Medicine, University of Washington, Seattle, Washington 98195-6500.
University of Washington · US

Funding

Collagen Cross-linking in Skeletal Aging and DiseaseR37AR037318 · NIAMS · UNIVERSITY OF WASHINGTON · PI EYRE, DAVID R · 2010 to 2019
$3.4M
PATHOLOGY OF INBORN SKELETAL DISEASESR01AR037318 · NIAMS · UNIVERSITY OF WASHINGTON · PI EYRE, DAVID R · 1986 to 2009
$3.4M
Collagens of Cartilage and the Intervertebral DiscR01AR036794 · NIAMS · UNIVERSITY OF WASHINGTON · PI EYRE, DAVID R · 1986 to 2014
$3.3M
Collagen Assembly in Tissue-Engineered CartilageR01AR057025 · NIAMS · UNIVERSITY OF WASHINGTON · PI FERNANDES, RUSSELL J · 2010 to 2022
$2.9M
Institute for Translational Health Science (TL1)TL1RR025016 · NCRR · UNIVERSITY OF WASHINGTON · PI DISIS, MARY L. · 2007 to 2011
$2.7M
COLLAGENS OF CARTILAGE AND THE INTERVERTEBRAL DISCR37AR036794 · NIAMS · UNIVERSITY OF WASHINGTON · PI EYRE, DAVID R. · 1994 to 2003
$1.1M
NCRR NIH HHS TL1 RR025016NIAMS NIH HHS AR036794NIAMS NIH HHS AR037318NIAMS NIH HHS AR057025NIAMS NIH HHS R01 AR036794NIAMS NIH HHS R01 AR037318NIAMS NIH HHS R01 AR057025NIAMS NIH HHS R37 AR036794NIAMS NIH HHS R37 AR037318
6 · The paper itself

Abstract

The fibrillar collagen types I, II, and V/XI have recently been shown to have partially 3-hydroxylated proline (3Hyp) residues at sites other than the established primary Pro-986 site in the collagen triple helical domain. These sites showed tissue specificity in degree of hydroxylation and a pattern of D-periodic spacing. This suggested a contributory role in fibril supramolecular assembly. The sites in clade A fibrillar α1(II), α2(V), and α1(I) collagen chains share common features with known prolyl 3-hydroxylase 2 (P3H2) substrate sites in α1(IV) chains implying a role for this enzyme. We pursued this possibility using the Swarm rat chondrosarcoma cell line (RCS-LTC) found to express high levels of P3H2 mRNA. Mass spectrometry determined that all the additional candidate 3Hyp substrate sites in the pN type II collagen made by these cells were highly hydroxylated. In RNA interference experiments, P3H2 protein synthesis was suppressed coordinately with prolyl 3-hydroxylation at Pro-944, Pro-707, and the C-terminal GPP repeat of the pNα1(II) chain, but Pro-986 remained fully hydroxylated. Furthermore, when P3H2 expression was turned off, as seen naturally in cultured SAOS-2 osteosarcoma cells, full 3Hyp occupancy at Pro-986 in α1(I) chains was unaffected, whereas 3-hydroxylation of residue Pro-944 in the α2(V) chain was largely lost, and 3-hydroxylation of Pro-707 in α2(V) and α2(I) chains were sharply reduced. The results imply that P3H2 has preferred substrate sequences among the classes of 3Hyp sites in clade A collagen chains.

Indexed as

Protein Processing, Post-TranslationalAnimalsCartilageCell Line, TumorChondrocytesCollagenFibrillar CollagensGene Expression Regulation, NeoplasticHumansMass SpectrometryMixed Function OxygenasesOsteoblastsOsteosarcomaProcollagen-Proline DioxygenaseRatsCollagenFibrillar CollagensMixed Function OxygenasesProcollagen-Proline Dioxygenaseproline, 2-oxoglutarate 3-dioxygenase

Identifiers

PMID21757687
PMCPMC3162427
OpenAlexW2069219708

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.