Evidence map›Paper›PMID 2175432›Full record

ArticleNucleic acids research1990

Phosphorylation influences the binding of the yeast RAP1 protein to the upstream activating sequence of the PGK gene.

J S Tsang, Y A Henry, A Chambers, A J Kingsman, S M Kingsman

Open access · greenAbstract read
In one paragraph

Article in Nucleic acids research, 1990. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. A combined expression-interaction model for inferring the temporal activity of transcription factors.Journal of computational biology : a journal of computational molecular cell biology · 2009
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

J S TsangDepartment of Biochemistry, University of Oxford, UK.
Y A Henry
A Chambers
A J Kingsman
S M Kingsman
University of Oxford · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Yeast repressor activator protein 1 (RAP1) binds in vitro to specific DNA sequences that are found in diverse genetic elements. Expression of the yeast phosphoglycerate kinase gene (PGK) requires the binding of RAP1 to the activator core sequence within the upstream activating sequence (UAS) of PGK. A DNA fragment Z+ which contains the activator core sequence of the PGK(UAS) has been shown to bind RAP1. Here we report that phosphatase treatment of RAP1 affected its binding to the PGK(UAS) but that this depended on the nature of the sequence flanking the 5' end of the activator core sequence. When the sequence flanking the 5' end of the activator core sequence was different from the PGK RAP1-binding site, phosphatase treatment of RAP1 decreased its binding to the DNA. When the 5' end of the binding site was a match to the PGK RAP1-binding site dephosphorylation of RAP1 increased RAP1 binding to the DNA. These observations were reproduced when the minimal functional DNA-binding domain of the RAP1 protein was used, implicating a phosphorylation-dependent binding of RAP1. This is the first evidence for phosphorylation-dependent binding of RAP1.

Indexed as

Gene Expression Regulation, FungalTranscription FactorsAmino Acid SequenceBase SequenceBinding SitesDNA-Binding ProteinsDNA, FungalFungal ProteinsGenes, FungalMolecular Sequence DataPhosphoglycerate KinasePhosphoric Monoester HydrolasesPhosphorylationRegulatory Sequences, Nucleic AcidSaccharomyces cerevisiaeDNA-Binding ProteinsDNA, FungalFungal ProteinsPhosphoglycerate KinasePhosphoric Monoester HydrolasesTranscription Factors

Identifiers

PMID2175432
PMCPMC332870
OpenAlexW2025931491

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.