Evidence map›Paper›PMID 21752903›Full record

ArticleJournal of virology2011

High-functional-avidity cytotoxic T lymphocyte responses to HLA-B-restricted Gag-derived epitopes associated with relative HIV control.

Christoph T Berger, Nicole Frahm, David A Price, Beatriz Mothe, Musie Ghebremichael, Kari L Hartman, Leah M Henry, Jason M Brenchley, Laura E Ruff, Vanessa Venturi and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 89 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
89citing papers in PubMed, 2 pooled it
6.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

89 citing papers in PubMed, 2 syntheses or guidelines pooled it, 140 citations in OpenAlex.

  1. Pooled it
  2. Transcriptional insights into the CD8Journal of translational medicine · 2020
    Pooled it
  3. Trial
  4. Trial
  5. Trial
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Low-affinity CD8American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2024
    Article
  12. CD3 downregulation identifies high-avidity human CD8 T cells.Clinical and experimental immunology · 2024
    Article
  13. Article
  14. Interferon-γ couples CD8Nature communications · 2023
    Article
  15. Influenza-Induced CD103ImmunoHorizons · 2022
    Article
  16. Article
  17. Review
  18. Review
  19. Review
  20. Review

29 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 9 institutions in 4 countries.

Christoph T BergerAIDS Research Institute, Fundació IrsiCaixa-HIVACAT, Hospital Universitari Germans Trias i Pujol, Ctra. del Canyet s/n, 08916 Badalona, Barcelona, Catalonia, Spain.
Nicole Frahm
David A Price
Beatriz Mothe
Musie Ghebremichael
Kari L Hartman
Leah M Henry
Jason M Brenchley
Laura E Ruff
Vanessa Venturi
Florencia Pereyra
John Sidney
Alessandro Sette
Daniel C Douek
Bruce D Walker
Daniel E Kaufmann
Christian Brander
Ragon Institute of MGH, MIT and Harvard · USLa Jolla Institute for Immunology · USCardiff University · GBDana-Farber Cancer Institute · USFred Hutch Cancer Center · USHoward Hughes Medical Institute · USInstitució Catalana de Recerca i Estudis Avançats · ESIrsiCaixa · ESUNSW Sydney · AU

Funding

The impact of HIV viral diversity and cellular immunity on HIV pathogenesisP30AI060354 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI ROBERT A. PARKER · 2004 to 2026
$94.4M
Mechanisms of Immune Activation and Disease Progression in Animal ModelsZIAAI001029 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI BRENCHLEY, JASON · 2009 to 2025
$28.2M
Promiscuous presentation of HLA class I restricted, HIV derived CTL epitopesR01AI067077 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI KAUFMANN, DANIEL E · 2005 to 2009
$1.9M
NIAID NIH HHS P30 AI060354NIAID NIH HHS R01 AI067077
6 · The paper itself

Abstract

Virus-specific cytotoxic T lymphocytes (CTL) with high levels of functional avidity have been associated with viral clearance in hepatitis C virus infection and with enhanced antiviral protective immunity in animal models. However, the role of functional avidity as a determinant of HIV-specific CTL efficacy remains to be assessed. Here we measured the functional avidities of HIV-specific CTL responses targeting 20 different, optimally defined CTL epitopes restricted by 13 different HLA class I alleles in a cohort comprising 44 HIV controllers and 68 HIV noncontrollers. Responses restricted by HLA-B alleles and responses targeting epitopes located in HIV Gag exhibited significantly higher functional avidities than responses restricted by HLA-A or HLA-C molecules (P = 0.0003) or responses targeting epitopes outside Gag (P < 0.0001). The functional avidities of Gag-specific and HLA-B-restricted responses were higher in HIV controllers than in noncontrollers (P = 0.014 and P = 0.018) and were not restored in HIV noncontrollers initiating antiretroviral therapy. T-cell receptor (TCR) analyses revealed narrower TCR repertoires in higher-avidity CTL populations, which were dominated by public TCR sequences in HIV controllers. Together, these data link the presence of high-avidity Gag-specific and HLA-B-restricted CTL responses with viral suppression in vivo and provide new insights into the immune parameters that mediate spontaneous control of HIV infection.

Indexed as

Cohort StudiesEpitopesgag Gene Products, Human Immunodeficiency VirusHIV InfectionsHIV Long-Term SurvivorsHLA-A AntigensHLA-B AntigensHLA-C AntigensHumansReceptors, Antigen, T-CellT-Lymphocytes, CytotoxicEpitopesgag Gene Products, Human Immunodeficiency VirusHLA-A AntigensHLA-B AntigensHLA-C AntigensReceptors, Antigen, T-Cell

Identifiers

PMID21752903
PMCPMC3165743
OpenAlexW2142644198

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.