Evidence map›Paper›PMID 21750236›Full record

ArticleThe Plant cell2011

Identification of genes in the phenylalanine metabolic pathway by ectopic expression of a MYB transcription factor in tomato fruit.

Valeriano Dal Cin, Denise M Tieman, Takayuki Tohge, Ryan McQuinn, Ric C H de Vos, Sonia Osorio, Eric A Schmelz, Mark G Taylor, Miriam T Smits-Kroon, Robert C Schuurink and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 121 citations in OpenAlex.

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  15. The Role ofPlants (Basel, Switzerland) · 2023
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  18. Shikimate Kinase Plays Important Roles in Anthocyanin Synthesis in Petunia.International journal of molecular sciences · 2022
    Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 8 institutions in 3 countries.

Valeriano Dal CinUniversity of Florida, Horticultural Sciences, Gainesville, Florida 32611-0690, USA.
Denise M Tieman
Takayuki Tohge
Ryan McQuinn
Ric C H de Vos
Sonia Osorio
Eric A Schmelz
Mark G Taylor
Miriam T Smits-Kroon
Robert C Schuurink
Michel A Haring
James Giovannoni
Alisdair R Fernie
Harry J Klee
U.S. Horticultural Research Laboratory · USMax Planck Institute of Molecular Plant Physiology · DEUniversity of Amsterdam · NLCenter for Medical, Agricultural and Veterinary Entomology · USCentre for BioSystems Genomics · NLCornell University · USNetherlands Metabolomics Centre · NLRobert W. Holley Center for Agriculture & Health · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Altering expression of transcription factors can be an effective means to coordinately modulate entire metabolic pathways in plants. It can also provide useful information concerning the identities of genes that constitute metabolic networks. Here, we used ectopic expression of a MYB transcription factor, Petunia hybrida ODORANT1, to alter Phe and phenylpropanoid metabolism in tomato (Solanum lycopersicum) fruits. Despite the importance of Phe and phenylpropanoids to plant and human health, the pathway for Phe synthesis has not been unambiguously determined. Microarray analysis of ripening fruits from transgenic and control plants permitted identification of a suite of coregulated genes involved in synthesis and further metabolism of Phe. The pattern of coregulated gene expression facilitated discovery of the tomato gene encoding prephenate aminotransferase, which converts prephenate to arogenate. The expression and biochemical data establish an arogenate pathway for Phe synthesis in tomato fruits. Metabolic profiling and ¹³C flux analysis of ripe fruits further revealed large increases in the levels of a specific subset of phenylpropanoid compounds. However, while increased levels of these human nutrition-related phenylpropanoids may be desirable, there were no increases in levels of Phe-derived flavor volatiles.

Indexed as

Gene Expression Regulation, PlantAmino Acids, DicarboxylicCyclohexanecarboxylic AcidsCyclohexenesFruitHumansMetabolic Networks and PathwaysMicroarray AnalysisMolecular Sequence DataMolecular StructurePetuniaPhenylalaninePhenylpyruvic AcidsPhylogenyPlant ExtractsPlant ProteinsAmino Acids, DicarboxylicCyclohexanecarboxylic AcidsCyclohexenesPhenylalaninephenylpyruvic acidPhenylpyruvic AcidsPlant ExtractsPlant Proteinsprephenate aminotransferaseprephenic acidpretyrosineProto-Oncogene Proteins c-mybRecombinant Fusion ProteinsTransaminasesTyrosineVolatile Organic Compounds

Identifiers

PMID21750236
PMCPMC3226207
OpenAlexW2162182508

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.