Evidence map›Paper›PMID 21749700›Full record

ArticleBMC molecular biology2011

TRPC1 transcript variants, inefficient nonsense-mediated decay and low up-frameshift-1 in vascular smooth muscle cells.

Alexandra M Dedman, Yasser Majeed, Sarka Tumova, Fanning Zeng, Bhaskar Kumar, Christopher Munsch, Alan N Bateson, Jürgen Wittmann, Hans-Martin Jäck, Karen E Porter and 1 more

Open access · hybridAbstract read
In one paragraph

Article in BMC molecular biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.1field-weighted citation impact, top 54% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Article
  3. Identification and classification of a new TRPM3 variant (γ subtype).The journal of physiological sciences : JPS · 2019
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Alexandra M DedmanMultidisciplinary Cardiovascular Research Centre, Institute of Membrane & Systems Biology, Faculty of Biological Sciences, Mount Preston Street, University of Leeds, Leeds, LS2 9JT, UK.
Yasser Majeed
Sarka Tumova
Fanning Zeng
Bhaskar Kumar
Christopher Munsch
Alan N Bateson
Jürgen Wittmann
Hans-Martin Jäck
Karen E Porter
David J Beech
University of Leeds · GBFriedrich-Alexander-Universität Erlangen-Nürnberg · DELeeds General Infirmary · GB

Funding

Wellcome Trust
6 · The paper itself

Abstract

backgroundTransient Receptor Potential Canonical 1 (TRPC1) is a widely-expressed mammalian cationic channel with functional effects that include stimulation of cardiovascular remodelling. The initial aim of this study was to investigate variation in TRPC1-encoding gene transcripts.

resultsExtensive TRPC1 transcript alternative splicing was observed, with exons 2, 3 and 5-9 frequently omitted, leading to variants containing premature termination codons. Consistent with the predicted sensitivity of such variants to nonsense-mediated decay (NMD) the variants were increased by cycloheximide. However it was notable that control of the variants by NMD was prominent in human embryonic kidney 293 cells but not human vascular smooth muscle cells. The cellular difference was attributed in part to a critical protein in NMD, up-frameshift-1 (UPF1), which was found to have low abundance in the vascular cells. Rescue of UPF1 by expression of exogenous UPF1 was found to suppress vascular smooth muscle cell proliferation.

conclusionsThe data suggest: (i) extensive NMD-sensitive transcripts of TRPC1; (ii) inefficient clearance of aberrant transcripts and enhanced proliferation of vascular smooth muscle cells in part because of low UPF1 expression.

Indexed as

Alternative SplicingCell LineCell ProliferationCells, CulturedCodon, NonsenseGene ExpressionHumansMuscle, Smooth, VascularMyocytes, Smooth MuscleProtein IsoformsRNA HelicasesTrans-ActivatorsTranscription, GeneticTRPC Cation ChannelsCodon, NonsenseProtein IsoformsRNA HelicasesTrans-Activatorstransient receptor potential cation channel, subfamily C, member 1TRPC Cation ChannelsUPF1 protein, human

Identifiers

PMID21749700
PMCPMC3224110
OpenAlexW2028990735

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.