Evidence map›Paper›PMID 21749486›Full record

ArticleMolecular microbiology2011

Deletion of alternative pathways for reductant recycling in Thermococcus kodakarensis increases hydrogen production.

Thomas J Santangelo, L'ubomíra Cuboňová, John N Reeve

Open access · greenAbstract read
In one paragraph

Article in Molecular microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 51 citations in OpenAlex.

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  14. Biotechnology of extremely thermophilic archaea.FEMS microbiology reviews · 2018
    Review
  15. Article
  16. Gene regulation of two ferredoxin:NADPExtremophiles : life under extreme conditions · 2017
    Article
  17. Structure of histone-based chromatin in Archaea.Science (New York, N.Y.) · 2017
    Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Thomas J SantangeloDepartment of Microbiology and Center for RNA Biology, Ohio State University, Columbus, OH 43210, USA. santangelo.11@osu.edu
L'ubomíra Cuboňová
John N Reeve
The Ohio State University · US

Funding

HISTONES AND NUCLEOSOMES IN ARCHAEA (ARCHAEBACTERIA)R01GM053185 · NIGMS · OHIO STATE UNIVERSITY · PI REEVE, JOHN NEWTON · 1995 to 2007
$1.7M
Archaeal Transcription TerminationF32GM073336 · NIGMS · OHIO STATE UNIVERSITY · PI SANTANGELO, THOMAS JAMES · 2005 to 2007
$151k
NIGMS NIH HHS 1F32-GM073336NIGMS NIH HHS F32 GM073336NIGMS NIH HHS GM53185NIGMS NIH HHS R01 GM053185
6 · The paper itself

Abstract

Hydrogen (H₂) production by Thermococcus kodakarensis compares very favourably with the levels reported for the most productive algal, fungal and bacterial systems. T. kodakarensis can also consume H₂ and is predicted to use several alternative pathways to recycle reduced cofactors, some of which may compete with H₂ production for reductant disposal. To explore the reductant flux and possible competition for H₂ production in vivo, T. kodakarensis TS517 was mutated to precisely delete each of the alternative pathways of reductant disposal, H₂ production and consumption. The results obtained establish that H₂ is generated predominantly by the membrane-bound hydrogenase complex (Mbh), confirm the essential role of the SurR (TK1086p) regulator in vivo, delineate the roles of sulfur (S°) regulon proteins and demonstrate that preventing H₂ consumption results in a substantial net increase in H₂ production. Constitutive expression of TK1086 (surR) from a replicative plasmid restored the ability of T. kodakarensis TS1101 (ΔTK1086) to grow in the absence of S° and stimulated H₂ production, revealing a second mechanism to increase H₂ production. Transformation of T. kodakarensis TS1101 with plasmids that express SurR variants constructed to direct the constitutive synthesis of the Mbh complex and prevent expression of the S° regulon was only possible in the absence of S° and, under these conditions, the transformants exhibited wild-type growth and H₂ production. With S° present, they grew slower but synthesized more H₂ per unit biomass than T. kodakarensis TS517.

Indexed as

Sequence DeletionGene ExpressionHydrogenMetabolic Networks and PathwaysPlasmidsReducing AgentsThermococcusHydrogenReducing Agents

Identifiers

PMID21749486
PMCPMC3179246
OpenAlexW1703052529

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.