Evidence map›Paper›PMID 21747729›Full record

ArticleInternational journal of molecular sciences2011

Modulation of rosR expression and exopolysaccharide production in Rhizobium leguminosarum bv. trifolii by phosphate and clover root exudates.

Monika Janczarek, Anna Skorupska

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
  2. Three separate pathways inApplied and environmental microbiology · 2024
    Article
  3. Review
  4. Review
  5. Article
  6. Surface Motility Regulation ofInternational journal of molecular sciences · 2022
    Article
  7. Review
  8. Article
  9. Review
  10. Transcriptomic Studies Reveal that theInternational journal of molecular sciences · 2019
    Article
  11. Article
  12. Oxalic Acid FromFrontiers in microbiology · 2019
    Article
  13. Mutation in theGenes · 2018
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Monika JanczarekDepartment of Genetics and Microbiology, Institute of Microbiology and Biotechnology, University of Maria Curie-Skłodowska, Akademicka 19 st., Lublin, 20-033, Poland; E-Mail: anna.skorupska@poczta.umcs.lublin.pl.
Anna Skorupska
Maria Curie-Skłodowska University · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The acidic exopolysaccharide (EPS) secreted in large amounts by the symbiotic nitrogen-fixing bacterium Rhizobium leguminosarum bv. trifolii is required for the establishment of an effective symbiosis with the host plant Trifolium spp. EPS biosynthesis in rhizobia is a very complex process regulated at both transcriptional and post-transcriptional levels and influenced by various nutritional and environmental conditions. The R. leguminosarum bv. trifolii rosR gene encodes a transcriptional regulator with a C(2)H(2) type zinc-finger motif involved in positive regulation of EPS synthesis. In silico sequence analysis of the 450-bp long rosR upstream region revealed the presence of several inverted repeats (IR1 to IR6) and motifs with significant identity to consensus sequences recognized by PhoB and LysR-type proteins associated with phosphate- and flavonoid-dependent gene regulation in R. leguminosarum. Using a set of sequentially truncated rosR-lacZ transcriptional fusions, the role of the individual motifs and the effect of phosphate and clover root exudates on rosR expression were established. In addition, the significance of IR4 inverted repeats in the repression, and P2-10 hexamer in the activation of rosR transcription, respectively, was found. The expression of rosR increased in the presence of phosphate (0.1-20 mM) and clover root exudates (10 μM). PHO boxes and the LysR motif located upstream of the rosR translation start site were engaged in the regulation of rosR transcription. The synthesis of EPS and biofilm formation decreased at high phosphate concentrations, but increased in the presence of clover root exudates, indicating a complex regulation of these processes.

Indexed as

5' Untranslated RegionsBacterial ProteinsBase SequenceBiofilmsExudates and TransudatesFlavonoidsMedicagoMolecular Sequence DataMutagenesis, Site-DirectedNucleic Acid ConformationPhosphatesPlant ExtractsPlant RootsPolysaccharides, BacterialPromoter Regions, GeneticRhizobium leguminosarum5' Untranslated RegionsBacterial ProteinsFlavonoidsPhosphatesPlant ExtractsPolysaccharides, BacterialRNAexopolysaccharide synthesisphosphateRhizobium leguminosarum bv. trifoliiroot exudatesrosR expression

Identifiers

PMID21747729
PMCPMC3131613
OpenAlexW2068148164

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.