Evidence map›Paper›PMID 21746903›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

Voltage-gated sodium channel (NaV) protein dissection creates a set of functional pore-only proteins.

David Shaya, Mohamed Kreir, Rebecca A Robbins, Stephanie Wong, Justus Hammon, Andrea Brüggemann, Daniel L Minor

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 89 citations in OpenAlex.

  1. Article
  2. Article
  3. Modular architecture of KEMBO reports · 2025
    Review
  4. Structure of the human KNature structural & molecular biology · 2025
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  5. Review
  6. Structure of the human KbioRxiv : the preprint server for biology · 2024
    Article
  7. Article
  8. EMC chaperone-CaNature · 2023
    Article
  9. Ion channel selectivity through ion-modulated changes of selectivity filter pProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  10. Structural basis for CaNature structural & molecular biology · 2023
    Article
  11. Article
  12. Article
  13. Article
  14. Current research in structural biology · 2021
    Article
  15. Article
  16. Polynuclear Ruthenium Amines Inhibit KCell chemical biology · 2020
    Article
  17. Article
  18. Review
  19. Article
  20. Valproic acid stimulatesStem cell investigation · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

David ShayaDepartment of Biochemistry, University of California, San Francisco, CA 94158-9001, USA.
Mohamed Kreir
Rebecca A Robbins
Stephanie Wong
Justus Hammon
Andrea Brüggemann
Daniel L Minor
Cardiovascular Institute Hospital · JPNanion (Germany) · DECellular Research (United States) · US

Funding

Yeast ExpressionP50GM073210 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STROUD, ROBERT M · 2004 to 2013
$21.5M
Structure and function of voltage-gated calcium channelsR01HL080050 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DANIEL L MINOR · 2005 to 2026
$9.8M
Structural Studies of Ion Channel Assembly and Signaling ComplexesR01DC007664 · NIDCD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DANIEL L MINOR · 2005 to 2026
$8.2M
Project 6 (Holton)U54GM094625 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STROUD, ROBERT M · 2010 to 2014
$8.0M
NHLBI NIH HHS R01 HL080050NHLBI NIH HHS R01-HL080050NIDCD NIH HHS R01 DC007664NIDCD NIH HHS R01-DC007664NIGMS NIH HHS P50 GM073210NIGMS NIH HHS P50-GM73210NIGMS NIH HHS U54 GM094625NIGMS NIH HHS U54GM094625
6 · The paper itself

Abstract

Many voltage-gated ion channel (VGIC) superfamily members contain six-transmembrane segments in which the first four form a voltage-sensing domain (VSD) and the last two form the pore domain (PD). Studies of potassium channels from the VGIC superfamily together with identification of voltage-sensor only proteins have suggested that the VSD and the PD can fold independently. Whether such transmembrane modularity is common to other VGIC superfamily members has remained untested. Here we show, using protein dissection, that the Silicibacter pomeroyi voltage-gated sodium channel (Na(V)Sp1) PD forms a stand-alone, ion selective pore (Na(V)Sp1p) that is tetrameric, α-helical, and that forms functional, sodium-selective channels when reconstituted into lipid bilayers. Mutation of the Na(V)Sp1p selectivity filter from LESWSM to LDDWSD, a change similar to that previously shown to alter ion selectivity of the bacterial sodium channel Na(V)Bh1 (NaChBac), creates a calcium-selective pore-only channel, Ca(V)Sp1p. We further show that production of PDs can be generalized by making pore-only proteins from two other extremophile Na(V)s: one from the hydrocarbon degrader Alcanivorax borkumensis (Na(V)Ab1p), and one from the arsenite oxidizer Alkalilimnicola ehrlichei (Na(V)Ae1p). Together, our data establish a family of active pore-only ion channels that should be excellent model systems for study of the factors that govern both sodium and calcium selectivity and permeability. Further, our findings suggest that similar dissection approaches may be applicable to a wide range of VGICs and, thus, serve as a means to simplify and accelerate biophysical, structural, and drug development efforts.

Indexed as

AlcanivoraceaeAmino Acid SequenceBacterial ProteinsBiophysical PhenomenaEctothiorhodospiraceaeElectrophysiological PhenomenaMolecular Sequence DataMutationPhylogenyProtein FoldingProtein Structure, QuaternaryProtein Structure, TertiaryRhodobacteraceaeSequence Homology, Amino AcidSodium ChannelsBacterial ProteinsSodium Channels

Identifiers

PMID21746903
PMCPMC3145705
OpenAlexW2168174140

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.