ArticleJournal of experimental botany2011
Integration of physical and genetic maps in apple confirms whole-genome and segmental duplications in the apple genome.
Article in Journal of experimental botany, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.
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Who cites it
34 citing papers in PubMed.
- Natural variation in MdNAC5 contributes to fruit firmness and ripening divergence in apple.Horticulture research · 2025Article
- Exploring genetic diversity and ascertaining genetic loci associated with important fruit quality traits in apple (Physiology and molecular biology of plants : an international journal of functional plant biology · 2023Article
- Genome-Wide Identification and Expression Profiling of Heat Shock Protein 20 Gene Family inGenes · 2022Article
- Construction of a dense genetic map of the Malus fusca fire blight resistant accession MAL0045 using tunable genotyping-by-sequencing SNPs and microsatellites.Scientific reports · 2020Article
- Article
- Genome-Wide Characterization of theFrontiers in genetics · 2020Article
- A Ma10 gene encoding P-type ATPase is involved in fruit organic acid accumulation in apple.Plant biotechnology journal · 2019Article
- Characterization of hawthorn (Physiology and molecular biology of plants : an international journal of functional plant biology · 2018Article
- Genome-wide Identification, Classification, Molecular Evolution and Expression Analysis of Malate Dehydrogenases in Apple.International journal of molecular sciences · 2018Article
- Genome-Wide Identification, Molecular Evolution, and Expression Divergence of Aluminum-Activated Malate Transporters in Apples.International journal of molecular sciences · 2018Article
- Development of CACTA transposon derived SCAR markers and their use in population structure analysis in Zea mays.Genetica · 2018Article
- Genotyping-by-sequencing application on diploid rose and a resulting high-density SNP-based consensus map.Horticulture research · 2018Article
- Developing gene-tagged molecular markers for evaluation of genetic association of appleHorticulture research · 2018Article
- A high-density, multi-parental SNP genetic map on apple validates a new mapping approach for outcrossing species.Horticulture research · 2016Article
- A dense SNP genetic map constructed using restriction site-associated DNA sequencing enables detection of QTLs controlling apple fruit quality.BMC genomics · 2015Article
- High-density interspecific genetic maps of kiwifruit and the identification of sex-specific markers.DNA research : an international journal for rapid publication of reports on genes and genomes · 2015Article
- A major QTL controlling apple skin russeting maps on the linkage group 12 of 'Renetta Grigia di Torriana'.BMC plant biology · 2015Article
- Construction of a high-density integrated genetic linkage map of rubber tree (Hevea brasiliensis) using genotyping-by-sequencing (GBS).Frontiers in plant science · 2015Article
- High-density genetic linkage map construction and identification of fruit-related QTLs in pear using SNP and SSR markers.Journal of experimental botany · 2014Article
- The 2-C-methylerythritol 4-phosphate pathway in melon is regulated by specialized isoforms for the first and last steps.Journal of experimental botany · 2014Article
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Authors and funding
6 authors.
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No grant is acknowledged in the PubMed record.
Abstract
A total of 355 simple sequence repeat (SSR) markers were developed, based on expressed sequence tag (EST) and bacterial artificial chromosome (BAC)-end sequence databases, and successfully used to construct an SSR-based genetic linkage map of the apple. The consensus linkage map spanned 1143 cM, with an average density of 2.5 cM per marker. Newly developed SSR markers along with 279 SSR markers previously published by the HiDRAS project were further used to integrate physical and genetic maps of the apple using a PCR-based BAC library screening approach. A total of 470 contigs were unambiguously anchored onto all 17 linkage groups of the apple genome, and 158 contigs contained two or more molecular markers. The genetically mapped contigs spanned ∼421 Mb in cumulative physical length, representing 60.0% of the genome. The sizes of anchored contigs ranged from 97 kb to 4.0 Mb, with an average of 995 kb. The average physical length of anchored contigs on each linkage group was ∼24.8 Mb, ranging from 17.0 Mb to 37.73 Mb. Using BAC DNA as templates, PCR screening of the BAC library amplified fragments of highly homologous sequences from homoeologous chromosomes. Upon integrating physical and genetic maps of the apple, the presence of not only homoeologous chromosome pairs, but also of multiple locus markers mapped to adjacent sites on the same chromosome was detected. These findings demonstrated the presence of both genome-wide and segmental duplications in the apple genome and provided further insights into the complex polyploid ancestral origin of the apple.
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