Evidence map›Paper›PMID 21743057›Full record

ArticleHuman molecular genetics2011

Genome-wide association study identifies new prostate cancer susceptibility loci.

Fredrick R Schumacher, Sonja I Berndt, Afshan Siddiq, Kevin B Jacobs, Zhaoming Wang, Sara Lindstrom, Victoria L Stevens, Constance Chen, Alison M Mondul, Ruth C Travis and 51 more

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 119 papers, 12 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
119citing papers in PubMed, 12 pooled it
16.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

119 citing papers in PubMed, 12 syntheses or guidelines pooled it, 176 citations in OpenAlex.

  1. Pooled it
  2. Germline Genetic Variants Associated with Somatic TMPRSS2:ERG Fusion Status in Prostate Cancer: A Genome-Wide Association Study.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2023
    Pooled it
  3. TERT rs10069690 polymorphism and cancers risk: A meta-analysis.Molecular genetics & genomic medicine · 2019
    Pooled it
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  9. Genetic variation in prostate-specific antigen-detected prostate cancer and the effect of control selection on genetic association studies.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2014
    Pooled it
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  15. Characterization of Genetic Etiologic Factors for Pediatric Acute Lymphoblastic Leukemia in Large Childhood Cancer Survivorship Cohorts.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2026
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59 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

61 authors at 20 institutions in 13 countries.

Fredrick R SchumacherDepartment of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA.
Sonja I Berndt
Afshan Siddiq
Kevin B Jacobs
Zhaoming Wang
Sara Lindstrom
Victoria L Stevens
Constance Chen
Alison M Mondul
Ruth C Travis
Daniel O Stram
Rosalind A Eeles
Douglas F Easton
Graham Giles
John L Hopper
David E Neal
Freddie C Hamdy
Jenny L Donovan
Kenneth Muir
Ali Amin Al Olama
Zsofia Kote-Jarai
Michelle Guy
Gianluca Severi
Henrik Grönberg
William B Isaacs
Robert Karlsson
Fredrik Wiklund
Jianfeng Xu
Naomi E Allen
Gerald L Andriole
Aurelio Barricarte
Heiner Boeing
H Bas Bueno-de-Mesquita
E David Crawford
W Ryan Diver
Carlos A Gonzalez
J Michael Gaziano
Edward L Giovannucci
Mattias Johansson
Loic Le Marchand
Jing Ma
Sabina Sieri
Pär Stattin
Meir J Stampfer
Anne Tjonneland
Paolo Vineis
Jarmo Virtamo
Ulla Vogel
Stephanie J Weinstein
Meredith Yeager
Michael J Thun
Laurence N Kolonel
Brian E Henderson
Demetrius Albanes
Richard B Hayes
Heather Spencer Feigelson
Elio Riboli
David J Hunter
Stephen J Chanock
Christopher A Haiman
Peter Kraft
National Cancer Institute · USUniversity of Southern California · USAmerican Cancer Society · USInstitute of Cancer Research · GBKarolinska Institutet · SEBrigham and Women's Hospital · USCancer Council Victoria · AUHarvard University · USNuffield Health · GBUniversity of Cambridge · GBUniversity of Hawaiʻi at Mānoa · USCentre international de recherche sur le cancer · FRDanish Cancer Society · DKFinnish Institute for Health and Welfare · FIFondazione IRCCS Istituto Nazionale dei Tumori · ITGerman Institute of Human Nutrition · DEImperial College London · GBInstitut d'Investigació Biomédica de Bellvitge · ESJohns Hopkins University · USKaiser Permanente · US

Funding

Physicians' Health Study II: Prevention Trial of VitaminsR01CA097193 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI GAZIANO, J. MICHAEL · 2002 to 2011
$15.7M
Characterizing Genetic Susceptibility to Breast and Prostate Cancer; the BPC3U01CA098758 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI HENDERSON, BRIAN E · 2003 to 2010
$11.0M
Characterizing Genetic Susceptibility to Breast and Prostate Cancer; the BPC3U01CA098233 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI HUNTER, DAVID JOHN · 2003 to 2010
$10.8M
Epidemiological and Clinical Translational Studies Post Genome-Wide AssociationU19CA148537 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI EASTON, DOUGLAS FREDERICK, EELES, ROSALIND · 2010 to 2014
$10.4M
Characterizing Genetic Susceptibility to Breast and Prostate Cancer; the BPC3U01CA098216 · NCI · INTERNATIONAL AGENCY FOR RES ON CANCER · PI RIBOLI, ELIO · 2003 to 2011
$7.4M
Characterizing Genetic Susceptibility to Breast and Prostate Cancer: The BPC3.U01CA098710 · NCI · AMERICAN CANCER SOCIETY, INC. · PI GAPSTUR, SUSAN M · 2003 to 2011
$4.2M
Genetic Susceptibility for Prostate Cancer ProgressionR01CA112517 · NCI · JOHNS HOPKINS UNIVERSITY · PI ISAACS, WILLIAM B · 2005 to 2009
$2.0M
Genetics Variants in the Genome Predisposing to Aggressive PCaR01CA133009 · NCI · JOHNS HOPKINS UNIVERSITY · PI ISAACS, WILLIAM B, ZHENG, SIQUN L · 2009 to 2011
$1.8M
Cancer Research UK 10118Cancer Research UK 11022Cancer Research UK C1287/A10118Cancer Research UK C16913/A6135Cancer Research UK C16913/A6835Cancer Research UK C5047/A10692Cancer Research UK C5047/A3354Cancer Research UK C5047/A7357Cancer Research UK C522/A8649Intramural NIH HHSMedical Research Council G0500966Medical Research Council G0900871NCI NIH HHS CA112517NCI NIH HHS CA133009NCI NIH HHS R01 CA097193NCI NIH HHS U01-CA98216NCI NIH HHS U01-CA98233NCI NIH HHS U01-CA98710NCI NIH HHS U01-CA98758NCI NIH HHS U19 CA148537
6 · The paper itself

Abstract

Prostate cancer (PrCa) is the most common non-skin cancer diagnosed among males in developed countries and the second leading cause of cancer mortality, yet little is known regarding its etiology and factors that influence clinical outcome. Genome-wide association studies (GWAS) of PrCa have identified at least 30 distinct loci associated with small differences in risk. We conducted a GWAS in 2782 advanced PrCa cases (Gleason grade ≥ 8 or tumor stage C/D) and 4458 controls with 571 243 single nucleotide polymorphisms (SNPs). Based on in silico replication of 4679 SNPs (Stage 1, P < 0.02) in two published GWAS with 7358 PrCa cases and 6732 controls, we identified a new susceptibility locus associated with overall PrCa risk at 2q37.3 (rs2292884, P= 4.3 × 10(-8)). We also confirmed a locus suggested by an earlier GWAS at 12q13 (rs902774, P= 8.6 × 10(-9)). The estimated per-allele odds ratios for these loci (1.14 for rs2292884 and 1.17 for rs902774) did not differ between advanced and non-advanced PrCa (case-only test for heterogeneity P= 0.72 and P= 0.61, respectively). Further studies will be needed to assess whether these or other loci are differentially associated with PrCa subtypes.

Indexed as

Genetic Predisposition to DiseaseGenome-Wide Association StudyPolymorphism, Single NucleotideCase-Control StudiesCohort StudiesHumansMaleProstatic Neoplasms

Identifiers

PMID21743057
PMCPMC3168287
OpenAlexW2148783825

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.