Evidence map›Paper›PMID 21742908›Full record

ArticleApplied and environmental microbiology2011

L-arabitol is the actual inducer of xylanase expression in Hypocrea jecorina (Trichoderma reesei).

Astrid R Mach-Aigner, Loreta Gudynaite-Savitch, Robert L Mach

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
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  5. The Promoter Toolbox for Recombinant Gene Expression inFrontiers in bioengineering and biotechnology · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Astrid R Mach-AignerGene Technology and Applied Biochemistry, Institute of Chemical Engineering, Vienna University of Technology, Gumpendorfer Str. 1a, A-1060 Vienna, Austria.
Loreta Gudynaite-Savitch
Robert L Mach
TU Wien · ATIogen Corporation · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The saprophytic fungus Hypocrea jecorina (anamorph, Trichoderma reesei) is an important native producer of hydrolytic enzymes, including xylanases. Regarding principles of sustainability, cheap and renewable raw materials, such as d-xylose (the backbone monomer of xylan), have been receiving increasing attention from industries. Recently, it was demonstrated that small (0.5 to 1 mM) amounts of d-xylose induce the highest expression of xylanase in H. jecorina. However, it was also reported that active metabolism of d-xylose is necessary for induction. In this report, we demonstrate that xylitol, the next intermediate in the pentose pathway after d-xylose, does not trigger transcription of xylanase-encoding genes in H. jecorina QM9414. The highest level of transcription of xylanolytic enzyme-encoding genes occurred in an xdh1 (encoding a xylitol dehydrogenase) deletion strain cultured in the presence of 0.5 mM d-xylose, suggesting that a metabolite upstream of xylitol is the inducer. The expression levels of xylanases in an xdh1-lad1 double-deletion strain were lower than that of an xdh1 deletion strain. This observation suggested that l-xylulose is not an inducer and led to the hypothesis that l-arabitol is the actual inducer of xylanase expression. A direct comparison of transcript levels following the incubation of the H. jecorina parental strain with various metabolites of the pentose pathway confirmed this hypothesis. In addition, we demonstrate that xyr1, the activator gene, is not induced in the presence of pentose sugars and polyols, regardless of the concentration used; instead, we observed low constitutive expression of xyr1.

Indexed as

Gene Expression Regulation, EnzymologicGene Expression Regulation, FungalTranscriptional ActivationFungal ProteinsGene Expression ProfilingHypocreaSugar AlcoholsXylosidasesarabitolFungal ProteinsSugar AlcoholsXylosidases

Identifiers

PMID21742908
PMCPMC3165376
OpenAlexW2038355453

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.