Evidence map›Paper›PMID 21742261›Full record

ArticleStructure (London, England : 1993)2011

NusA interaction with the α subunit of E. coli RNA polymerase is via the UP element site and releases autoinhibition.

Kristian Schweimer, Stefan Prasch, Pagadala Santhanam Sujatha, Mikhail Bubunenko, Max E Gottesman, Paul Rösch

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Clusters of bacterial RNA polymerase are biomolecular condensates that assemble through liquid-liquid phase separation.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  8. Article
  9. Article
  10. Mechanisms of Transcriptional Pausing in Bacteria.Journal of molecular biology · 2019
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Kristian SchweimerLehrstuhl Biopolymere und Forschungszentrum für Bio-Makromoleküle, Universität Bayreuth, Universitätsstraße 30, 95447 Bayreuth, Germany.
Stefan Prasch
Pagadala Santhanam Sujatha
Mikhail Bubunenko
Max E Gottesman
Paul Rösch
University of Bayreuth · DEColumbia University Irving Medical Center · USFrederick National Laboratory for Cancer Research · US

Funding

CONTROL OF TRANSCRIPTION TERMINATION IN E. COLIR01GM037219 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI GOTTESMAN, MAX ELLIOT · 1986 to 2017
$6.6M
Control of Transcription Termination in E. coliR56GM037219 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GOTTESMAN, MAX ELLIOT · 2009 to 2009
$399k
CCR NIH HHS HHSN261200800001CIntramural NIH HHSNCI NIH HHS HHSN261200800001ENIGMS NIH HHS GM037219NIGMS NIH HHS R01 GM037219NIGMS NIH HHS R56 GM037219
6 · The paper itself

Abstract

Elongating Escherichia coli RNAP is modulated by NusA protein. The C-terminal domain (CTD) of the RNAP α subunit (αCTD) interacts with the acidic CTD 2 (AR2) of NusA, releasing the autoinhibitory blockade of the NusA S1-KH1-KH2 motif and allowing NusA to bind nascent nut spacer RNA. We determined the solution conformation of the AR2:αCTD complex. The αCTD residues that interface with AR2 are identical to those that recognize UP promoter elements A nusA-ΔAR2 mutation does not affect UP-dependent rrnH transcription initiation in vivo. Instead, the mutation inhibits Rho-dependent transcription termination at phage λtR1, which lies adjacent to the λnutR sequence. The Rho-dependent λtimm terminator, which is not preceded by a λnut sequence, is fully functional. We propose that constitutive binding of NusA-ΔAR2 to λnutR occludes Rho. In addition, the mutation confers a dominant defect in exiting stationary phase.

Indexed as

Escherichia coliPromoter Regions, GeneticTranscription, GeneticBinding SitesCloning, MolecularCrystallizationCrystallography, X-RayDNA-Directed RNA PolymerasesEscherichia coli ProteinsMagnetic Resonance SpectroscopyModels, MolecularMutationPeptide Elongation FactorsPlasmidsProtein BindingProtein Structure, TertiaryDNA-Directed RNA PolymerasesEscherichia coli ProteinsnusA protein, E coliNutR protein, bacteriophage lambdaPeptide Elongation FactorsRecombinant Fusion ProteinsRho FactorRNARNA polymerase alpha subunitTranscriptional Elongation FactorsTranscription FactorsViral Proteins

Identifiers

PMID21742261
PMCPMC3134791
OpenAlexW2093783684

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.