Evidence map›Paper›PMID 21738669›Full record

ArticlePloS one2011

A frameshift mutation in golden retriever dogs with progressive retinal atrophy endorses SLC4A3 as a candidate gene for human retinal degenerations.

Louise M Downs, Berit Wallin-Håkansson, Mike Boursnell, Stefan Marklund, Åke Hedhammar, Katarina Truvé, Louise Hübinette, Kerstin Lindblad-Toh, Tomas Bergström, Cathryn S Mellersh

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 60 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Allele frequency ofFrontiers in veterinary science · 2022
    Article
  7. Article
  8. Article
  9. Article
  10. AGenes · 2019
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Mouse models of SLC4-linked disorders of HCOAmerican journal of physiology. Cell physiology · 2018
    Review
  17. Article
  18. Article
  19. Clinical studies on progressive retinal atrophy in 31 dogs.Iranian journal of veterinary research · 2017
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 3 countries.

Louise M DownsCanine Genetics, Animal Health Trust, Newmarket, United Kingdom. louise.downs@aht.org.uk
Berit Wallin-Håkansson
Mike Boursnell
Stefan Marklund
Åke Hedhammar
Katarina Truvé
Louise Hübinette
Kerstin Lindblad-Toh
Tomas Bergström
Cathryn S Mellersh
Swedish University of Agricultural Sciences · SEAnimal Health Trust · GBMassachusetts Institute of Technology · USSwedish Kennel Club · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Progressive retinal atrophy (PRA) in dogs, the canine equivalent of retinitis pigmentosa (RP) in humans, is characterised by vision loss due to degeneration of the photoreceptor cells in the retina, eventually leading to complete blindness. It affects more than 100 dog breeds, and is caused by numerous mutations. RP affects 1 in 4000 people in the Western world and 70% of causal mutations remain unknown. Canine diseases are natural models for the study of human diseases and are becoming increasingly useful for the development of therapies in humans. One variant, prcd-PRA, only accounts for a small proportion of PRA cases in the Golden Retriever (GR) breed. Using genome-wide association with 27 cases and 19 controls we identified a novel PRA locus on CFA37 (p(raw) = 1.94×10(-10), p(genome) = 1.0×10(-5)), where a 644 kb region was homozygous within cases. A frameshift mutation was identified in a solute carrier anion exchanger gene (SLC4A3) located within this region. This variant was present in 56% of PRA cases and 87% of obligate carriers, and displayed a recessive mode of inheritance with full penetrance within those lineages in which it segregated. Allele frequencies are approximately 4% in the UK, 6% in Sweden and 2% in France, but the variant has not been found in GRs from the US. A large proportion of cases (approximately 44%) remain unexplained, indicating that PRA in this breed is genetically heterogeneous and caused by at least three mutations. SLC4A3 is important for retinal function and has not previously been associated with spontaneously occurring retinal degenerations in any other species, including humans.

Indexed as

AnimalsDisease Models, AnimalDogsFrameshift MutationGenome-Wide Association StudyHumansRetinal DegenerationRetinitis Pigmentosa

Identifiers

PMID21738669
PMCPMC3124514
OpenAlexW2104040102

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.