Evidence map›Paper›PMID 21738475›Full record

ArticlePLoS pathogens2011

The N-glycan glycoprotein deglycosylation complex (Gpd) from Capnocytophaga canimorsus deglycosylates human IgG.

Francesco Renzi, Pablo Manfredi, Manuela Mally, Suzette Moes, Paul Jenö, Guy R Cornelis

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 74 citations in OpenAlex.

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  12. Milk Glycans and Their Interaction with the Infant-Gut Microbiota.Annual review of food science and technology · 2018
    Review
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  15. The Complete Genome Sequence of the Fish PathogenFrontiers in microbiology · 2017
    Article
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  17. IDCases · 2017
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  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Francesco RenziBiozentrum der Universität Basel, Basel, Switzerland.
Pablo Manfredi
Manuela Mally
Suzette Moes
Paul Jenö
Guy R Cornelis
University of Basel · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

C. canimorsus 5 has the capacity to grow at the expenses of glycan moieties from host cells N-glycoproteins. Here, we show that C. canimorsus 5 also has the capacity to deglycosylate human IgG and we analyze the deglycosylation mechanism. We show that deglycosylation is achieved by a large complex spanning the outer membrane and consisting of the Gpd proteins and sialidase SiaC. GpdD, -G, -E and -F are surface-exposed outer membrane lipoproteins. GpdDEF could contribute to the binding of glycoproteins at the bacterial surface while GpdG is a endo-β-N-acetylglucosaminidase cleaving the N-linked oligosaccharide after the first N-linked GlcNAc residue. GpdC, resembling a TonB-dependent OM transporter is presumed to import the oligosaccharide into the periplasm after its cleavage from the glycoprotein. The terminal sialic acid residue of the oligosaccharide is then removed by SiaC, a periplasm-exposed lipoprotein in direct contact with GpdC. Finally, most likely degradation of the oligosaccharide proceeds sequentially from the desialylated non reducing end by the action of periplasmic exoglycosidases, including β-galactosidases, β-N-Acetylhexosaminidases and α-mannosidases.

Indexed as

alpha-MannosidosisBacterial Outer Membrane Proteinsbeta-Galactosidasebeta-N-AcetylhexosaminidasesCapnocytophagaCell LineGlycoproteinsGlycosylationGram-Negative Bacterial InfectionsHumansImmunoglobulin GLipoproteinsMannosyl-Glycoprotein Endo-beta-N-AcetylglucosaminidaseN-Acetylneuraminic AcidNeuraminidasePolysaccharidesBacterial Outer Membrane Proteinsbeta-Galactosidasebeta-N-AcetylhexosaminidasesGlycoproteinsImmunoglobulin GLipoproteinsMannosyl-Glycoprotein Endo-beta-N-AcetylglucosaminidaseN-Acetylneuraminic AcidNeuraminidasePolysaccharides

Identifiers

PMID21738475
PMCPMC3128124
OpenAlexW2043049790

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.