Evidence map›Paper›PMID 2173824›Full record

ArticleNucleic acids research1990

Binding sites in mammalian genes and viral gene regulatory regions recognized by methylated DNA-binding protein.

X Y Zhang, C K Asiedu, P C Supakar, R Khan, K C Ehrlich, M Ehrlich

Open access · greenAbstract readComparative Study
In one paragraph

Article in Nucleic acids research, 1990. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 57 citations in OpenAlex.

  1. Cancers · 2021
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  8. Collagen alpha1(I) gene (COL1A1) is repressed by RFX family.The Journal of biological chemistry · 2005
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  20. Inactive chromatin spreads from a focus of methylation.Molecular and cellular biology · 1993
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

X Y ZhangDepartment of Biochemistry, Tulane Medical School, New Orleans, LA 70112.
C K Asiedu
P C Supakar
R Khan
K C Ehrlich
M Ehrlich
Tulane University · USSouthern Regional Research Center · USTulane Medical Center · US

Funding

RECOGNITION OF METHYLATED DNA BY MAMMALIAN PROTEINSR01GM033999 · NIGMS · TULANE UNIVERSITY OF LOUISIANA · PI EHRLICH, MELANIE · 1985 to 1995
–
NIGMS NIH HHS GM33999
6 · The paper itself

Abstract

Methylated DNA-binding protein (MDBP), a ubiquitous mammalian protein, recognizes a variety of related DNA sequences. Some of these sequences require methylation of their CpG dinucleotides for binding and others do not. We report that MDBP binds, in a DNA methylation-independent fashion, to two sites in the mouse polyomavirus enhancer, one in the enhancer of the human hepatitis B virus, and to one in the long terminal repeat of equine infectious anemia proviral DNA. We have also found a number of MDBP sites in human and rodent DNAs which bind much better to MDBP when they are methylated at CpG dinucleotides within the recognition site. These include sites at the beginning of the human genes for hypoxanthine phosphoribosyl transferase, HLA-A2, -A3, and -A25 antigens, and alpha-galactosidase A. In the case of methylation-responsive MDBP sites, changes in their methylation status during differentiation or DNA replication could help drive development by modulating transcription.

Indexed as

Genes, RegulatorGenes, Viralalpha-GalactosidaseAnimalsBase SequenceBinding SitesCell NucleusDNA-Binding ProteinsEnhancer Elements, GeneticHeLa CellsHLA AntigensHypoxanthine PhosphoribosyltransferaseL CellsMiceMolecular Sequence DataPolyomavirusalpha-GalactosidaseDNA-Binding ProteinsHLA AntigensHypoxanthine PhosphoribosyltransferaseMbd1 protein, mouse

Identifiers

PMID2173824
PMCPMC332489
OpenAlexW2003920409

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.