Evidence map›Paper›PMID 21736719›Full record

ArticleBMC microbiology2011

Genetic diversity of Streptococcus suis isolates as determined by comparative genome hybridization.

Astrid de Greeff, Henk J Wisselink, Freddy M de Bree, Constance Schultsz, Christoph G Baums, Hoa Ngo Thi, Norbert Stockhofe-Zurwieden, Hilde E Smith

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
5.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 62 citations in OpenAlex.

  1. Review
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  12. Update onPathogens (Basel, Switzerland) · 2020
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  14. Tools for Molecular Epidemiology ofPathogens (Basel, Switzerland) · 2020
    Review
  15. Comparative Virulence and Genomic Analysis ofFrontiers in microbiology · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Astrid de GreeffInfection Biology, Central Veterinary Institute of Wageningen UR (University & Research Centre), Edelhertweg 15, Lelystad, 8219 PH, The Netherlands. astrid.degreeff@wur.nl
Henk J Wisselink
Freddy M de Bree
Constance Schultsz
Christoph G Baums
Hoa Ngo Thi
Norbert Stockhofe-Zurwieden
Hilde E Smith
Wageningen University & Research · NLOxford University Clinical Research Unit · VNHochschule Hannover · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundStreptococcus suis is a zoonotic pathogen that causes infections in young piglets. S. suis is a heterogeneous species. Thirty-three different capsular serotypes have been described, that differ in virulence between as well as within serotypes.

resultsIn this study, the correlation between gene content, serotype, phenotype and virulence among 55 S. suis strains was studied using Comparative Genome Hybridization (CGH). Clustering of CGH data divided S. suis isolates into two clusters, A and B. Cluster A isolates could be discriminated from cluster B isolates based on the protein expression of extracellular factor (EF). Cluster A contained serotype 1 and 2 isolates that were correlated with virulence. Cluster B mainly contained serotype 7 and 9 isolates. Genetic similarity was observed between serotype 7 and serotype 2 isolates that do not express muramidase released protein (MRP) and EF (MRP⁻EF⁻), suggesting these isolates originated from a common founder. Profiles of 25 putative virulence-associated genes of S. suis were determined among the 55 isolates. Presence of all 25 genes was shown for cluster A isolates, whereas cluster B isolates lacked one or more putative virulence genes. Divergence of S. suis isolates was further studied based on the presence of 39 regions of difference. Conservation of genes was evaluated by the definition of a core genome that contained 78% of all ORFs in P1/7.

conclusionsIn conclusion, we show that CGH is a valuable method to study distribution of genes or gene clusters among isolates in detail, yielding information on genetic similarity, and virulence traits of S. suis isolates.

Indexed as

Comparative Genomic HybridizationGenetic VariationAnimalsBacterial ProteinsBacterial Typing TechniquesCluster AnalysisGenotypePhenotypeSerotypingStreptococcal InfectionsStreptococcus suisSwineSwine DiseasesVirulenceVirulence FactorsBacterial ProteinsVirulence Factors

Identifiers

PMID21736719
PMCPMC3142484
OpenAlexW2079379896

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.