Evidence map›Paper›PMID 21731656›Full record

ArticlePloS one2011

Discovering disease associations by integrating electronic clinical data and medical literature.

Antony B Holmes, Alexander Hawson, Feng Liu, Carol Friedman, Hossein Khiabanian, Raul Rabadan

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 49 citations in OpenAlex.

  1. Applications of network analysis to routinely collected health care data: a systematic review.Journal of the American Medical Informatics Association : JAMIA · 2018
    Pooled it
  2. Gender-sensitive word embeddings for healthcare.Journal of the American Medical Informatics Association : JAMIA · 2022
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  6. Review
  7. Birth month affects lifetime disease risk: a phenome-wide method.Journal of the American Medical Informatics Association : JAMIA · 2015
    Article
  8. Article
  9. Article
  10. Similarity-based modeling applied to signal detection in pharmacovigilance.CPT: pharmacometrics & systems pharmacology · 2014
    Article
  11. Association between Kawasaki disease and autism: a population-based study in Taiwan.International journal of environmental research and public health · 2014
    Article
  12. A pipeline to extract drug-adverse event pairs from multiple data sources.BMC medical informatics and decision making · 2014
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Live sequence charts to model medical information.Theoretical biology & medical modelling · 2012
    Article
  19. Review
  20. OPIC: Ontology-driven Patient Information Capturing system for epilepsy.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Antony B HolmesDepartment of Biomedical Informatics, Columbia University College of Physicians and Surgeons, New York, New York, United States of America.
Alexander Hawson
Feng Liu
Carol Friedman
Hossein Khiabanian
Raul Rabadan
Columbia University · US

Funding

Viral Pathogenesis and TherapeuticsU54AI057158 · NIAID · WADSWORTH CENTER · PI LEVY, DAVID E · 2003 to 2014
$100.8M
Pharmacovigilence using Natural Language Processing, Statistics, and the EHRR01LM010016 · NLM · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI FRIEDMAN, CAROL · 2009 to 2016
$3.4M
A Biomedical Natural Language Processing ResourceR01LM008635 · NLM · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI FRIEDMAN, CAROL · 2005 to 2008
$2.1M
Integrated discovery and hypothesis testing of new associations in rare diseasesR01LM010140 · NLM · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI RABADAN, RAUL · 2009 to 2010
$1.1M
NIAID NIH HHS U54 AI057158NIAID NIH HHS U54-AI057158NLM NIH HHS 1R01LM010140-01NLM NIH HHS LM008635NLM NIH HHS R01 LM008635NLM NIH HHS R01 LM010016NLM NIH HHS R01 LM010140
6 · The paper itself

Abstract

Electronic health record (EHR) systems offer an exceptional opportunity for studying many diseases and their associated medical conditions within a population. The increasing number of clinical record entries that have become available electronically provides access to rich, large sets of patients' longitudinal medical information. By integrating and comparing relations found in the EHRs with those already reported in the literature, we are able to verify existing and to identify rare or novel associations. Of particular interest is the identification of rare disease co-morbidities, where the small numbers of diagnosed patients make robust statistical analysis difficult. Here, we introduce ADAMS, an Application for Discovering Disease Associations using Multiple Sources, which contains various statistical and language processing operations. We apply ADAMS to the New York-Presbyterian Hospital's EHR to combine the information from the relational diagnosis tables and textual discharge summaries with those from PubMed and Wikipedia in order to investigate the co-morbidities of the rare diseases Kaposi sarcoma, toxoplasmosis, and Kawasaki disease. In addition to finding well-known characteristics of diseases, ADAMS can identify rare or previously unreported associations. In particular, we report a statistically significant association between Kawasaki disease and diagnosis of autistic disorder.

Indexed as

ComorbidityDiseaseElectronic Health RecordsPubMedDatabases as TopicHumansNew York

Identifiers

PMID21731656
PMCPMC3121722
OpenAlexW2009055819

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.