Evidence map›Paper›PMID 21731639›Full record

ArticlePloS one2011

The complete genome sequence of Mycoplasma bovis strain Hubei-1.

Yuan Li, Huajun Zheng, Yang Liu, Yanwei Jiang, Jiuqing Xin, Wei Chen, Zhiqiang Song

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 77 citations in OpenAlex.

  1. RNA sequencing ofJournal of veterinary science · 2025
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  3. Macrophage extracellular traps are induced by Mycoplasma bovis in bovine macrophages through NADPH oxidase/ROS-dependent manner and their antibacterial efficacy.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2024
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  4. Review
  5. Frontiers in veterinary science · 2024
    Review
  6. Review
  7. Article
  8. Article
  9. Frontiers in immunology · 2022
    Review
  10. Frontiers in microbiology · 2022
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  11. Review
  12. Pathogens (Basel, Switzerland) · 2020
    Article
  13. Population Genomic Analysis ofMicroorganisms · 2020
    Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Complete Genome Sequences of ThreeMicrobiology resource announcements · 2019
    Article
  20. Genome-Wide Analysis ofG3 (Bethesda, Md.) · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Yuan LiNational Contagious Bovine Pleuropneumonia Reference Laboratory, Division of Bacterial Diseases, State Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute, The Chinese Academy of Agricultural Sciences (CAAS), Harbin, China.
Huajun Zheng
Yang Liu
Yanwei Jiang
Jiuqing Xin
Wei Chen
Zhiqiang Song
Chinese Academy of Agricultural Sciences · CNChinese National Human Genome Center · CNHarbin Veterinary Research Institute · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Infection by Mycoplasma bovis (M. bovis) can induce diseases, such as pneumonia and otitis media in young calves and mastitis and arthritis in older animals. Here, we report the finished and annotated genome sequence of M. bovis strain Hubei-1, a strain isolated in 2008 that caused calf pneumonia on a Chinese farm. The genome of M. bovis strain Hubei-1 contains a single circular chromosome of 953,114 bp with a 29.37% GC content. We identified 803 open reading frames (ORFs) that occupy 89.5% of the genome. While 34 ORFs were Hubei-1 specific, 662 ORFs had orthologs in the M. bovis type strain PG45 genome. Genome analysis validated lateral gene transfer between M. bovis and the Mycoplasma mycoides subspecies mycoides, while phylogenetic analysis found that the closest M. bovis neighbor is Mycoplasma agalactiae. Glycerol may be the main carbon and energy source of M. bovis, and most of the biosynthesis pathways were incomplete. We report that 47 lipoproteins, 12 extracellular proteins and 18 transmembrane proteins are phase-variable and may help M. bovis escape the immune response. Besides lipoproteins and phase-variable proteins, genomic analysis found two possible pathogenicity islands, which consist of four genes and 11 genes each, and several other virulence factors including hemolysin, lipoate protein ligase, dihydrolipoamide dehydrogenase, extracellular cysteine protease and 5'-nucleotidase.

Indexed as

Base SequenceChromosomes, BacterialDNA RepairDNA ReplicationEvolution, MolecularGene Transfer, HorizontalGenome, BacterialMolecular Sequence DataMutagenesis, InsertionalMycoplasma bovisPhylogenyProtein BiosynthesisPseudogenesReplication OriginSequence Homology, Nucleic AcidTandem Repeat Sequences

Identifiers

PMID21731639
PMCPMC3120828
OpenAlexW2085013260

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.