Evidence map›Paper›PMID 21729882›Full record

ArticleHuman molecular genetics2011

Diverse mutational mechanisms cause pathogenic subtelomeric rearrangements.

Yue Luo, Karen E Hermetz, Jodi M Jackson, Jennifer G Mulle, Anne Dodd, Karen D Tsuchiya, Blake C Ballif, Lisa G Shaffer, Jannine D Cody, David H Ledbetter and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Hotspots of Human Mutation.Trends in genetics : TIG · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Yue LuoDepartment of Human Genetics, Emory University School of Medicine, 615 Michael Street, Atlanta, GA 30322, USA.
Karen E Hermetz
Jodi M Jackson
Jennifer G Mulle
Anne Dodd
Karen D Tsuchiya
Blake C Ballif
Lisa G Shaffer
Jannine D Cody
David H Ledbetter
Christa L Martin
M Katharine Rudd
Emory University · USPerkinElmer (United States) · USChromosome 18 Registry & Research Society · USUniversity of Washington · US

Funding

Mechanism of subtelomeric breaksR01MH092902 · NIMH · EMORY UNIVERSITY · PI RUDD, MARY KATHARINE · 2010 to 2013
$1.6M
NIMH NIH HHS MH092902NIMH NIH HHS R01 MH092902
6 · The paper itself

Abstract

Chromosome rearrangements are a significant cause of intellectual disability and birth defects. Subtelomeric rearrangements, including deletions, duplications and translocations of chromosome ends, were first discovered over 40 years ago and are now recognized as being responsible for several genetic syndromes. Unlike the deletions and duplications that cause some genomic disorders, subtelomeric rearrangements do not typically have recurrent breakpoints and involve many different chromosome ends. To capture the molecular mechanisms responsible for this heterogeneous class of chromosome abnormality, we coupled high-resolution array CGH with breakpoint junction sequencing of a diverse collection of subtelomeric rearrangements. We analyzed 102 breakpoints corresponding to 78 rearrangements involving 28 chromosome ends. Sequencing 21 breakpoint junctions revealed signatures of non-homologous end-joining, non-allelic homologous recombination between interspersed repeats and DNA replication processes. Thus, subtelomeric rearrangements arise from diverse mutational mechanisms. In addition, we find hotspots of subtelomeric breakage at the end of chromosomes 9q and 22q; these sites may correspond to genomic regions that are particularly susceptible to double-strand breaks. Finally, fine-mapping the smallest subtelomeric rearrangements has narrowed the critical regions for some chromosomal disorders.

Indexed as

Chromosome AberrationsGene RearrangementMutationBase SequenceChromosome BreakageChromosome DisordersHumansMaleMolecular Sequence DataRecombination, GeneticTelomere

Identifiers

PMID21729882
PMCPMC3168286
OpenAlexW2128446764

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.