Evidence map›Paper›PMID 21729881›Full record

SynthesisHuman molecular genetics2011

Genome-wide association study identifies common variants associated with circulating vitamin E levels.

Jacqueline M Major, Kai Yu, William Wheeler, Hong Zhang, Marilyn C Cornelis, Margaret E Wright, Meredith Yeager, Kirk Snyder, Stephanie J Weinstein, Alison Mondul and 10 more

Open access · hybridAbstract readMeta-AnalysisRandomized Controlled Trial
In one paragraph

Synthesis in Human molecular genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 100 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
100citing papers in PubMed, 2 pooled it
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

100 citing papers in PubMed, 2 syntheses or guidelines pooled it, 154 citations in OpenAlex.

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40 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 9 institutions in 3 countries.

Jacqueline M MajorDivision of Cancer Epidemiology and Genetics and Core Genotyping Facility, National Cancer Institute, NIH, Bethesda, MD 20892, USA,
Kai Yu
William Wheeler
Hong Zhang
Marilyn C Cornelis
Margaret E Wright
Meredith Yeager
Kirk Snyder
Stephanie J Weinstein
Alison Mondul
Heather Eliassen
Mark Purdue
Aditi Hazra
Catherine A McCarty
Sara Hendrickson
Jarmo Virtamo
David Hunter
Stephen Chanock
Peter Kraft
Demetrius Albanes
Cancer Genetics (United States) · USHarvard University · USInformation Management Services · USNational Cancer Institute · USBrigham and Women's Hospital · USFinnish Institute for Health and Welfare · FIFudan University · CNMarshfield Clinic · USUniversity of Illinois Chicago · US

Funding

Alpha-Tocopherol, Beta-Carotene Cancer Prevention (ATBC) StudyZIACP010195 · NCI · DIVISION OF CANCER EPIDEMIOLOGY AND GENETICS · PI ALBANES, DEMETRIUS · 2009 to 2025
$22.5M
Training Program in Cancer EpidemiologyT32CA009001 · NCI · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI A. Heather Eliassen, Meir Stampfer · 1985 to 2026
$17.3M
Oxidative Stree, Antioxidants and Risk of Breast Cancer: A Prospective AnalysisR01CA131218 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI ELIASSEN, A. HEATHER · 2009 to 2012
$2.3M
U S-FINLAND STUDIES OF NUTRITION AND CANCERN01CN045165 · CN · NATIONAL PUBLIC HEALTH INSTITUTE · PI HEINONEN, O · 1985 to 1996
–
CCR NIH HHS N01 RC037004CCR NIH HHS N01-RC-45035Intramural NIH HHSNCI NIH HHS 5 T32 CA09001-35NCI NIH HHS HHSN261201000006CNCI NIH HHS N01 CN045165NCI NIH HHS R01 CA131218NCI NIH HHS T32 CA009001
6 · The paper itself

Abstract

In genome-wide association studies (GWAS) of common genetic variants associated with circulating alpha- and gamma-tocopherol concentrations in two adult cohorts comprising 5006 men of European descent, we observed three loci associated with alpha-tocopherol levels, two novel single-nucleotide polymorphisms (SNPs), rs2108622 on 19pter-p13.11 (P= 1.7 × 10(-8)) and rs11057830 on 12q24.31 (P= 2.0 × 10(-8)) and confirmed a previously reported locus marked by rs964184 on 11q23.3 (P= 2.7 × 10(-10)). The three SNPs have been reported to be associated with lipid metabolism and/or regulation. We replicated these findings in a combined meta-analysis with two independent samples, P= 7.8 × 10(-12) (rs964184 on 11q23.3 near BUD13, ZNF259 and APOA1/C3/A4/A5), P= 1.4 × 10(-10) (rs2108622 on 19pter-p13.11 near CYP4F2) and P= 8.2 × 10(-9) (rs11057830 on 12q24.31 near SCARB1). Combined, these SNPs explain 1.7% of the residual variance in log alpha-tocopherol levels. In one of the two male GWAS cohorts (n= 992), no SNPs were significantly associated with gamma-tocopherol concentrations after including data from the replication sample for 71 independent SNPs with P< 1 × 10(-4) identified.

Indexed as

Genome-Wide Association StudyPolymorphism, Single NucleotideAdultAgedCohort StudiesFemaleGenetic VariationHumansMaleMiddle AgedNeoplasmsVitamin EWhite PeopleVitamin E

Identifiers

PMID21729881
PMCPMC3168288
OpenAlexW2113653941

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.