Evidence map›Paper›PMID 21729880›Full record

ArticleHuman molecular genetics2011

Modifier genes and non-genetic factors reshape anatomical deficits in Zfp423-deficient mice.

Wendy A Alcaraz, Edward Chen, Phoebe Valdes, Eunnie Kim, Yuan Hung Lo, Jennifer Vo, Bruce A Hamilton

Open access · greenAbstract read
In one paragraph

Article in Human molecular genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.0field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Modelling phenotypes, variants and pathomechanisms of syndromic diseases in different systems.Medizinische Genetik : Mitteilungsblatt des Berufsverbandes Medizinische Genetik e.V · 2024
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Development (Cambridge, England) · 2017
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Strain-specific modifier genes governing craniofacial phenotypes.Birth defects research. Part A, Clinical and molecular teratology · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 3 countries.

Wendy A AlcarazBiomedical Sciences Graduate Program,, University of California-San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0644, USA
Edward Chen
Phoebe Valdes
Eunnie Kim
Yuan Hung Lo
Jennifer Vo
Bruce A Hamilton
Center for Genomic Science · ITUniversity of California, San Diego · US

Funding

Training Program in Basic Clinical GeneticsT32GM008666 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMILTON, BRUCE A · 1998 to 2021
$8.6M
Genetic Mechanisms in Cerebellum MalformationsR01NS054871 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMILTON, BRUCE A · 2007 to 2011
$1.6M
Determining the Role of Zfp423 in Cerebellar DevelopmentF31NS061513 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ALCARAZ, WENDY · 2008 to 2009
$47k
NIGMS NIH HHS T32 GM008666NINDS NIH HHS F31 NS061513NINDS NIH HHS R01 NS05487NINDS NIH HHS R01 NS054871
6 · The paper itself

Abstract

Development of neural circuitry depends on the integration of signaling pathways to coordinate specification, proliferation and differentiation of cell types in the right number, in the right place, at the right time. Zinc finger protein 423 (Zfp423), a 30-zinc finger transcription factor, forms alternate complexes with components of several developmental signaling pathways, suggesting it as a point of signal integration during brain development. We previously showed that mice lacking Zfp423 have reduced proliferation of cerebellar precursor cells, resulting in complete loss of vermis and variable hypoplasia of cerebellar hemispheres. Here, we show that Zfp423(-/-) hemisphere malformations are shaped by both genetic and non-genetic factors, producing distinct phenotype distributions in different inbred genetic backgrounds. In genetic mapping studies, we identify four additive modifier loci (Amzn1-4) and seven synthetically interacting loci (Smzn1.1-3.1) that together explain approximately one-third of the phenotypic variance. Strain-specific sequence polymorphism and expression data provide a reduced list of functional variant candidate genes at each modifier locus. Environmental covariates add only modest explanatory power, suggesting an additional stochastic component. These results provide a comprehensive analysis of sources of phenotype variation in a model of hindbrain malformation.

Indexed as

Genes, ModifierAnimalsCerebellar DiseasesDisease Models, AnimalDNA-Binding ProteinsEnvironmentFemaleHumansMaleMiceMice, Inbred BALB CMice, Inbred C3HMice, Inbred C57BLMice, KnockoutTranscription FactorsDNA-Binding ProteinsEbfaz protein, mouseTranscription Factors

Identifiers

PMID21729880
PMCPMC3168291
OpenAlexW2159718837

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.