Evidence map›Paper›PMID 21729785›Full record

ArticleCell2011

Stepwise insertion and inversion of a type II signal anchor sequence in the ribosome-Sec61 translocon complex.

Prasanna K Devaraneni, Brian Conti, Yoshihiro Matsumura, Zhongying Yang, Arthur E Johnson, William R Skach

Abstract read
In one paragraph

Article in Cell, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed.

  1. Review
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  13. Cotranslational Biogenesis of Membrane Proteins in Bacteria.Frontiers in molecular biosciences · 2022
    Review
  14. Review
  15. Review
  16. Folding and Insertion of Transmembrane Helices at the ER.International journal of molecular sciences · 2021
    Review
  17. Review
  18. Article
  19. Article
  20. Article

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Prasanna K DevaraneniDepartment of Biochemistry and Molecular Biology, Oregon Health and Sciences University, Portland, OR 97239, USA.
Brian Conti
Yoshihiro Matsumura
Zhongying Yang
Arthur E Johnson
William R Skach

Funding

Multidisciplinary Research Training in Pulmonary MedicineT32HL083808 · NHLBI · OREGON HEALTH & SCIENCE UNIVERSITY · PI LEWINSOHN, DAVID M., SLATORE, CHRISTOPHER G. · 2008 to 2025
$5.3M
THE INTERACTION OF AA-TRNA WITH EF-TU AND RIBOSOMESR01GM026494 · NIGMS · UNIVERSITY OF OKLAHOMA NORMAN · PI JOHNSON, ARTHUR E · 1985 to 2011
$3.7M
MECHANISMS OF POLYTOPIC PROTEIN BIOGENESIS IN THE ERR01GM053457 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI SKACH, WILLIAM R · 1996 to 2013
$3.5M
BIOGENESIS AND MOLECULAR PATHOGENESIS OF CFTRR01DK051818 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI SKACH, WILLIAM R · 1997 to 2012
$2.9M
Mechanisms of Sec61-Mediated Polytopic Protein Integration into the ERF32GM083568 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI CONTI, BRIAN J · 2008 to 2009
$101k
NHLBI NIH HHS HL083808NHLBI NIH HHS T32 HL083808NIDDK NIH HHS DK51818NIDDK NIH HHS R01 DK051818NIGMS NIH HHS F32 GM083568NIGMS NIH HHS GM083568NIGMS NIH HHS GM26494NIGMS NIH HHS GM53457NIGMS NIH HHS R01 GM026494NIGMS NIH HHS R01 GM053457
6 · The paper itself

Abstract

In eukaryotic cells, the ribosome-Sec61 translocon complex (RTC) establishes membrane protein topology by cotranslationally partitioning nascent polypeptides into the cytosol, ER lumen, and lipid bilayer. Using photocrosslinking, collisional quenching, cysteine accessibility, and protease protection, we show that a canonical type II signal anchor (SA) acquires its topology through four tightly coupled and mechanistically distinct steps: (1) head-first insertion into Sec61α, (2) nascent chain accumulation within the RTC, (3) inversion from type I to type II topology, and (4) stable translocation of C-terminal flanking residues. Progression through each stage is induced by incremental increases in chain length and involves abrupt changes in the molecular environment of the SA. Importantly, type II SA inversion deviates from a type I SA at an unstable intermediate whose topology is controlled by dynamic interactions between the ribosome and translocon. Thus, the RTC coordinates SA topogenesis within a protected environment via sequential energetic transitions of the TM segment.

Indexed as

Protein BiosynthesisAnimalsCell-Free SystemDogsEndoplasmic ReticulumMembrane ProteinsMicrosomesProtein Sorting SignalsRabbitsRibosomesSEC Translocation ChannelsMembrane ProteinsProtein Sorting SignalsSEC Translocation Channels

Identifiers

PMID21729785
PMCPMC3181170

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.