Evidence map›Paper›PMID 21726567›Full record

ArticleJournal of molecular biology2011

Multiple factors insulate Msh2-Msh6 mismatch repair activity from defects in Msh2 domain I.

Charanya Kumar, Sarah C Piacente, Justin Sibert, Andrew R Bukata, Jaime O'Connor, Eric Alani, Jennifer A Surtees

Abstract read
In one paragraph

Article in Journal of molecular biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 18 citations in OpenAlex.

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  5. Frontiers in cellular and infection microbiology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Charanya KumarDepartment of Biochemistry, School of Medical and Biomedical Sciences, State University of New York at Buffalo, Buffalo, NY 14214, USA.
Sarah C Piacente
Justin Sibert
Andrew R Bukata
Jaime O'Connor
Eric Alani
Jennifer A Surtees
University at Buffalo, State University of New York · USCornell University · US

Funding

Roles for Mismatch Repair Proteins in Maintaining Genome StabilityR01GM053085 · NIGMS · CORNELL UNIVERSITY ITHACA · PI ALANI, ERIC E. · 1995 to 2019
$7.3M
Roles for Mismatch Repair Proteins in Maintaining Genome StabilityR01GM087459 · NIGMS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI SURTEES, JENNIFER ANNE · 2009 to 2013
$1.4M
NIGMS NIH HHS GM087459NIGMS NIH HHS GM53085NIGMS NIH HHS R01 GM053085NIGMS NIH HHS R01 GM087459
6 · The paper itself

Abstract

DNA mismatch repair (MMR) is a highly conserved mutation avoidance mechanism that corrects DNA polymerase misincorporation errors. In initial steps in MMR, Msh2-Msh6 binds mispairs and small insertion/deletion loops, and Msh2-Msh3 binds larger insertion/deletion loops. The msh2Δ1 mutation, which deletes the conserved DNA-binding domain I of Msh2, does not dramatically affect Msh2-Msh6-dependent repair. In contrast, msh2Δ1 mutants show strong defects in Msh2-Msh3 functions. Interestingly, several mutations identified in patients with hereditary non-polyposis colorectal cancer map to domain I of Msh2; none have been found in MSH3. To understand the role of Msh2 domain I in MMR, we examined the consequences of combining the msh2Δ1 mutation with mutations in two distinct regions of MSH6 and those that increase cellular mutational load (pol3-01 and rad27). These experiments reveal msh2Δ1-specific phenotypes in Msh2-Msh6 repair, with significant effects on mutation rates. In vitro assays demonstrate that msh2Δ1-Msh6 DNA binding is less specific for DNA mismatches and produces an altered footprint on a mismatch DNA substrate. Together, these results provide evidence that, in vivo, multiple factors insulate MMR from defects in domain I of Msh2 and provide insights into how mutations in Msh2 domain I may cause hereditary non-polyposis colorectal cancer.

Indexed as

DNA Mismatch RepairBase SequenceBlotting, WesternDeoxyribonuclease IDNA-Binding ProteinsDNA FootprintingDNA, FungalElectrophoretic Mobility Shift AssayMolecular Sequence DataMutationMutS Homolog 2 ProteinProtein Structure, TertiarySaccharomyces cerevisiae ProteinsSequence Homology, Nucleic AcidDeoxyribonuclease IDNA-Binding ProteinsDNA, FungalMSH2 protein, S cerevisiaeMSH6 protein, S cerevisiaeMutS Homolog 2 ProteinSaccharomyces cerevisiae Proteins

Identifiers

PMID21726567
PMCPMC3163898
OpenAlexW2009119431

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.