Evidence map›Paper›PMID 21725302›Full record

ArticleNature chemical biology2011

Small-molecule hydrophobic tagging-induced degradation of HaloTag fusion proteins.

Taavi K Neklesa, Hyun Seop Tae, Ashley R Schneekloth, Michael J Stulberg, Timothy W Corson, Thomas B Sundberg, Kanak Raina, Scott A Holley, Craig M Crews

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 183 papers.

0numbers the graph read from it
0cells of the map it votes in
183citing papers in PubMed
7.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

183 citing papers in PubMed, 411 citations in OpenAlex.

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  15. Conformational plasticity of a BiP-GRP94 chaperone complex.Nature structural & molecular biology · 2025
    Article
  16. Review
  17. Designing the Proteome with Chemical Tools: Degrons and Beyond.Chembiochem : a European journal of chemical biology · 2025
    Review
  18. Review
  19. Article
  20. Article

123 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Taavi K NeklesaDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, Connecticut, USA.
Hyun Seop Tae
Ashley R Schneekloth
Michael J Stulberg
Timothy W Corson
Thomas B Sundberg
Kanak Raina
Scott A Holley
Craig M Crews
Yale University · USIndiana University – Purdue University Indianapolis · US

Funding

A MULTIPRONGED, PROTEIN DEGRADATION-BASED APPROACH TO INHIBIT HIV TRANSMISSIONR01AI084140 · NIAID · YALE UNIVERSITY · PI CREWS, CRAIG M · 2009 to 2012
$1.8M
NIAID NIH HHS R01 AI084140NIAID NIH HHS R01AI084140
6 · The paper itself

Abstract

The ability to regulate any protein of interest in living systems with small molecules remains a challenge. We hypothesized that appending a hydrophobic moiety to the surface of a protein would mimic the partially denatured state of the protein, thus engaging the cellular quality control machinery to induce its proteasomal degradation. We designed and synthesized bifunctional small molecules to bind a bacterial dehalogenase (the HaloTag protein) and present a hydrophobic group on its surface. Hydrophobic tagging of the HaloTag protein with an adamantyl moiety induced the degradation of cytosolic, isoprenylated and transmembrane HaloTag fusion proteins in cell culture. We demonstrated the in vivo utility of hydrophobic tagging by degrading proteins expressed in zebrafish embryos and by inhibiting Hras1(G12V)-driven tumor progression in mice. Therefore, hydrophobic tagging of HaloTag fusion proteins affords small-molecule control over any protein of interest, making it an ideal system for validating potential drug targets in disease models.

Indexed as

AnimalsBiosensing TechniquesCell LineFluorescent DyesHumansHydrophobic and Hydrophilic InteractionsLuminescent ProteinsMiceMolecular StructureRecombinant ProteinsSensitivity and SpecificityStaining and LabelingZebrafishFluorescent DyesLuminescent ProteinsRecombinant Proteins

Identifiers

PMID21725302
PMCPMC3139752
OpenAlexW1982166691

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.