Evidence map›Paper›PMID 21725295›Full record

ArticleNature structural & molecular biology2011

Selective removal of promoter nucleosomes by the RSC chromatin-remodeling complex.

Yahli Lorch, Joachim Griesenbeck, Hinrich Boeger, Barbara Maier-Davis, Roger D Kornberg

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed, 1 pooled it
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 1 synthesis or guideline pooled it, 47 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Analysis of Yeast RNAP I Transcription of Nucleosomal Templates In Vitro.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  4. Review
  5. The Active Mechanism of Nucleosome Depletion by Poly(dA:dT) Tracts In Vivo.International journal of molecular sciences · 2021
    Review
  6. Specialized RSC: Substrate Specificities for a Conserved Chromatin Remodeler.BioEssays : news and reviews in molecular, cellular and developmental biology · 2020
    Article
  7. Article
  8. Article
  9. Article
  10. Article
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  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Yahli LorchDepartment of Structural Biology, Stanford University School of Medicine, Stanford, California, USA. lorch@stanford.edu
Joachim Griesenbeck
Hinrich Boeger
Barbara Maier-Davis
Roger D Kornberg
Stanford University · USStanford Medicine · USUniversity of California, Santa Cruz · US

Funding

RNA POLYMERASE II TRANSCRIPTION SYSTEM FROM YEASTR01GM036659 · NIGMS · STANFORD UNIVERSITY · PI KORNBERG, ROGER D · 1986 to 2016
$4.7M
RNA POLYMERASE II TRANSCRIPTION SYSTEM FROM YEASTR37GM036659 · NIGMS · STANFORD UNIVERSITY · PI KORNBERG, ROGER D · 1998 to 2008
$4.6M
NIGMS NIH HHS GM36659NIGMS NIH HHS R01 GM036659NIGMS NIH HHS R37 GM036659
6 · The paper itself

Abstract

Purified chromatin rings, excised from the PHO5 locus of Saccharomyces cerevisiae in transcriptionally repressed and activated states, were remodeled with RSC and ATP. Nucleosomes were translocated, and those originating on the promoter of repressed rings were removed, whereas those originating on the open reading frame (ORF) were retained. Treatment of the repressed rings with histone deacetylase diminished the removal of promoter nucleosomes. These findings point to a principle of promoter chromatin remodeling for transcription, namely that promoter specificity resides primarily in the nucleosomes rather than in the remodeling complex that acts upon them.

Indexed as

Promoter Regions, GeneticAcid PhosphataseChromatin Assembly and DisassemblyDNA-Binding ProteinsHistone DeacetylasesNucleic Acid ConformationNucleosomesOpen Reading FramesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscriptional ActivationTranscription FactorsAcid PhosphataseDNA-Binding ProteinsHistone DeacetylasesNucleosomesPHO5 protein, S cerevisiaeRSC complex, S cerevisiaeSaccharomyces cerevisiae ProteinsTranscription Factors

Identifiers

PMID21725295
PMCPMC3150231
OpenAlexW2072166144

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.