Evidence map›Paper›PMID 21725017›Full record

ArticleJournal of bacteriology2011

CT406 encodes a chlamydial ortholog of NrdR, a repressor of ribonucleotide reductase.

Elizabeth Di Russo Case, Johnny C Akers, Ming Tan

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.0field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Molecular pathogenesis ofFrontiers in cellular and infection microbiology · 2023
    Review
  3. Article
  4. Article
  5. The Repressor Function of theJournal of bacteriology · 2020
    Article
  6. Article
  7. Article
  8. Ironing Out the Unconventional Mechanisms of Iron Acquisition and Gene Regulation inFrontiers in cellular and infection microbiology · 2017
    Review
  9. Article
  10. Article
  11. Article
  12. Ribonucleotide reductases: essential enzymes for bacterial life.Frontiers in cellular and infection microbiology · 2014
    Review
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Elizabeth Di Russo CaseDepartment of Microbiology and Molecular Genetics, University of California, Irvine, Irvine, CA 92697-4025, USA.
Johnny C Akers
Ming Tan
University of California, Irvine · US

Funding

The Regulation of gene expression in ChlamydiaR01AI044198 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI TAN, MING · 1999 to 2021
$7.1M
Molecular mechanisms of gene regulation in ChlamydiaK02AI057563 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI TAN, MING · 2004 to 2008
$474k
Mechanisms of temporal gene regulation in ChlamydiaR56AI044198 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI TAN, MING · 2010 to 2010
$383k
NIAID NIH HHS AI 057563NIAID NIH HHS AI 44198NIAID NIH HHS K02 AI057563NIAID NIH HHS R01 AI044198NIAID NIH HHS R56 AI044198
6 · The paper itself

Abstract

Chlamydia trachomatis is an obligate intracellular bacterium that is dependent on its host cell for nucleotides. Chlamydia imports ribonucleotide triphosphates (NTPs) but not deoxyribonucleotide triphosphates (dNTPs) and instead uses ribonucleotide reductase to convert imported ribonucleotides into deoxyribonucleotides for DNA synthesis. The genes encoding ribonucleotide reductase have been recently shown to be negatively controlled by a conserved regulator called NrdR. In this study, we provide direct evidence that Escherichia coli NrdR is a transcriptional repressor and that C. trachomatis CT406 encodes its chlamydial ortholog. We showed that CT406 binds specifically to two NrdR boxes upstream of the nrdAB operon in C. trachomatis. Using an in vitro transcription assay, we confirmed that these NrdR boxes function as an operator since they were necessary and sufficient for CT406-mediated repression. We validated our in vitro findings with reporter studies in E. coli showing that both E. coli NrdR and CT406 repressed transcription from the E. coli nrdH and C. trachomatis nrdAB promoters in vivo. This in vivo repression was reversed by hydroxyurea treatment. Since hydroxyurea inhibits ribonucleotide reductase and reduces intracellular deoxyribonucleotide levels, these results suggest that NrdR activity is modulated by a deoxyribonucleotide corepressor.

Indexed as

Bacterial ProteinsBase SequenceChlamydia trachomatisChromosome MappingDeoxyribonucleotidesDNA, BacterialDNA ReplicationEscherichia coliEscherichia coli ProteinsGene Expression Regulation, BacterialGenes, BacterialHydroxyureaMolecular Sequence DataOperonPlasmidsRepressor ProteinsBacterial ProteinsDeoxyribonucleotidesDNA, BacterialEscherichia coli ProteinsHydroxyureaNrdR protein, E coliRepressor ProteinsRibonucleotide Reductases

Identifiers

PMID21725017
PMCPMC3165505
OpenAlexW2105627052

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.