Evidence map›Paper›PMID 21724886›Full record

ArticleApplied and environmental microbiology2011

Glycoside hydrolase activities of thermophilic bacterial consortia adapted to switchgrass.

John M Gladden, Martin Allgaier, Christopher S Miller, Terry C Hazen, Jean S VanderGheynst, Philip Hugenholtz, Blake A Simmons, Steven W Singer

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
7.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 103 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

John M GladdenJoint BioEnergy Institute, Emeryville, CA 94608, USA.
Martin Allgaier
Christopher S Miller
Terry C Hazen
Jean S VanderGheynst
Philip Hugenholtz
Blake A Simmons
Steven W Singer
Joint BioEnergy Institute · USLawrence Berkeley National Laboratory · USPlanetary Science Institute · USUniversity of California, Davis · US

Funding

NINDS NIH HHS L30 NS050030
6 · The paper itself

Abstract

Industrial-scale biofuel production requires robust enzymatic cocktails to produce fermentable sugars from lignocellulosic biomass. Thermophilic bacterial consortia are a potential source of cellulases and hemicellulases adapted to harsher reaction conditions than commercial fungal enzymes. Compost-derived microbial consortia were adapted to switchgrass at 60°C to develop thermophilic biomass-degrading consortia for detailed studies. Microbial community analysis using small-subunit rRNA gene amplicon pyrosequencing and short-read metagenomic sequencing demonstrated that thermophilic adaptation to switchgrass resulted in low-diversity bacterial consortia with a high abundance of bacteria related to thermophilic paenibacilli, Rhodothermus marinus, and Thermus thermophilus. At lower abundance, thermophilic Chloroflexi and an uncultivated lineage of the Gemmatimonadetes phylum were observed. Supernatants isolated from these consortia had high levels of xylanase and endoglucanase activities. Compared to commercial enzyme preparations, the endoglucanase enzymes had a higher thermotolerance and were more stable in the presence of 1-ethyl-3-methylimidazolium acetate ([C2mim][OAc]), an ionic liquid used for biomass pretreatment. The supernatants were used to saccharify [C2mim][OAc]-pretreated switchgrass at elevated temperatures (up to 80°C), demonstrating that these consortia are an excellent source of enzymes for the development of enzymatic cocktails tailored to more extreme reaction conditions.

Indexed as

Adaptation, PhysiologicalMicrobial ConsortiaBacteriaBacterial Typing TechniquesBase SequenceBiomassEnzyme ActivationFermentationGenes, rRNAGlycoside HydrolasesLigninMolecular Sequence DataPanicumPhylogenyProtein StabilitySequence Analysis, DNAGlycoside HydrolasesLigninlignocelluloseSoil

Identifiers

PMID21724886
PMCPMC3165268
OpenAlexW2108390160

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.