Evidence map›Paper›PMID 21724609›Full record

ArticleNucleic acids research2011

Patient mutation in AIRE disrupts P-TEFb binding and target gene transcription.

Kristina Žumer, Ana Plemenitaš, Kalle Saksela, B Matija Peterlin

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Aire in Autoimmunity.Annual review of immunology · 2024
    Review
  5. Review
  6. Review
  7. P-TEFb as A Promising Therapeutic Target.Molecules (Basel, Switzerland) · 2020
    Review
  8. Article
  9. Twenty Years of AIRE.Frontiers in immunology · 2018
    Review
  10. Article
  11. Article
  12. Review
  13. Central tolerance to self revealed by the autoimmune regulator.Annals of the New York Academy of Sciences · 2015
    Review
  14. Review
  15. Article
  16. An RNAi screen for Aire cofactors reveals a role for Hnrnpl in polymerase release and Aire-activated ectopic transcription.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  17. Introduction to cotranscriptional RNA splicing.Methods in molecular biology (Clifton, N.J.) · 2014
    Article
  18. Human APECED; a Sick Thymus Syndrome?Frontiers in immunology · 2013
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 3 countries.

Kristina ŽumerInstitute of Biochemistry, Faculty of Medicine, University of Ljubljana, Vrazov trg 2, 1000 Ljubljana, Slovenia. kristina.zumer@helsinki.fi
Ana Plemenitaš
Kalle Saksela
B Matija Peterlin
University of Helsinki · FIUniversity of California, San Francisco · USUniversity of Ljubljana · SI

Funding

Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS · 1988 to 2026
$93.6M
NIAID NIH HHS P30 AI027763
6 · The paper itself

Abstract

Autoimmune regulator (AIRE) is a transcription factor that induces the expression of a large subset of otherwise strictly tissue restricted antigens in medullary thymic epithelial cells, thereby enabling their presentation to developing T cells for negative selection. Mutations in AIRE lead to autoimmune-polyendocrinopathy-candidiasis-ectodermal dystrophy (APECED), a rare monogenetic disease. Although it has been reported that AIRE interacts with proteins involved in nuclear transport, DNA-damage response, chromatin remodeling, transcription and pre-mRNA-splicing, the precise mechanism of AIRE-induced tissue restricted antigen expression has remained elusive. In this study, we investigated an APECED patient mutation that causes the loss of the extreme C-terminus of AIRE and found that this mutant protein is transcriptionaly inactive. When tethered heterologously to DNA, this domain could stimulate transcription and splicing by itself. Moreover, the loss of this C-terminus disrupted interactions with the positive transcription elongation factor b (P-TEFb). Via P-TEFb, AIRE increased levels of RNA polymerase II on and enhanced pre-mRNA splicing of heterologous and endogenous target genes. Indeed, the inhibition of CDK9, the kinase subunit of P-TEFb, inhibited AIRE-induced pre-mRNA splicing of these genes. Thus, AIRE requires P-TEFb to activate transcription elongation and co-transcriptional processing of target genes.

Indexed as

MutationRNA SplicingTranscriptional ActivationAIRE ProteinAnimalsCell LineCyclin-Dependent Kinase 9HumansMicePhosphorylationPolyendocrinopathies, AutoimmunePositive Transcriptional Elongation Factor BProtein Structure, TertiaryRNA, MessengerRNA PrecursorsTranscription FactorsAIRE ProteinCyclin-Dependent Kinase 9Positive Transcriptional Elongation Factor BRNA, MessengerRNA PrecursorsTranscription Factors

Identifiers

PMID21724609
PMCPMC3185428
OpenAlexW2154852694

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.