Evidence map›Paper›PMID 21723868›Full record

ArticleInternational journal for parasitology2011

Mining the Giardia genome and proteome for conserved and unique basal body proteins.

Tineke Lauwaet, Alias J Smith, David S Reiner, Edwin P Romijn, Catherine C L Wong, Barbara J Davids, Sheila A Shah, John R Yates, Frances D Gillin

Open access · greenAbstract read
In one paragraph

Article in International journal for parasitology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.6field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 55 citations in OpenAlex.

  1. Review
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  10. Article
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  12. Microtubule organelles in Giardia.Advances in parasitology · 2020
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Tineke LauwaetDepartment of Pathology, University of California San Diego, San Diego, CA 92103, USA. tlauwaet@ucsd.edu
Alias J Smith
David S Reiner
Edwin P Romijn
Catherine C L Wong
Barbara J Davids
Sheila A Shah
John R Yates
Frances D Gillin
University of California, San Diego · USScripps Research Institute · US

Funding

ZDS2P REGULATES SWE1P-DEPENDENT POLARIZED CELL GROWTH IN S CEREVISIAEP41RR011823 · NCRR · UNIVERSITY OF WASHINGTON · PI DAVIS, TRACY · 1996 to 2011
$24.7M
TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI MACCOSS, MICHAEL · 2012 to 2021
$20.7M
TL MOLECULES AND GAMMA-DELTA T CELLSP01DK035108 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KAGNOFF, MARTIN FREDERICK · 1986 to 2013
$19.2M
Training Grant in GastroenterologyT32DK007202 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GHOSH, PRADIPTA · 1985 to 2022
$7.7M
Next-generation 5-nitroimidazoles against giardiasisU01AI075527 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ECKMANN, LARS · 2007 to 2011
$4.9M
GIARDIA--A MODEL FOR ANCIENT EUKARYOTE GENOME FUNCTIONSR01AI042488 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GILLIN, FRANCES D. · 1998 to 2010
$2.4M
Mechanisms of Giardia Iamblia ExcystationR01AI051687 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GILLIN, FRANCES D. · 2003 to 2007
$1.7M
NCRR NIH HHS P41 RR011823NIAID NIH HHS AI42488NIAID NIH HHS AI51687NIAID NIH HHS R01 AI042488NIAID NIH HHS R01 AI051687NIAID NIH HHS U01 AI075527NIDDK NIH HHS DK35108NIDDK NIH HHS P01 DK035108NIDDK NIH HHS T32 DK007202NIDDK NIH HHS T32-DK007202-34S2NIGMS NIH HHS P41 GM103533PHS HHS UAIO75527
6 · The paper itself

Abstract

Giardia lamblia is a flagellated protozoan parasite and a major cause of diarrhoea in humans. Its microtubular cytoskeleton mediates trophozoite motility, attachment and cytokinesis, and is characterised by an attachment disk and eight flagella that are each nucleated in a basal body. To date, only 10 giardial basal body proteins have been identified, including universal signalling proteins that are important for regulating mitosis or differentiation. In this study, we have exploited bioinformatics and proteomic approaches to identify new Giardia basal body proteins and confocal microscopy to confirm their localisation in interphase trophozoites. This approach identified 75 homologs of conserved basal body proteins in the genome including 65 not previously known to be associated with Giardia basal bodies. Thirteen proteins were confirmed to co-localise with centrin to the Giardia basal bodies. We also demonstrate that most basal body proteins localise to additional cytoskeletal structures in interphase trophozoites. This might help to explain the roles of the four pairs of flagella and Giardia-specific organelles in motility and differentiation. A deeper understanding of the composition of the Giardia basal bodies will contribute insights into the complex signalling pathways that regulate its unique cytoskeleton and the biological divergence of these conserved organelles.

Indexed as

Genome, ProtozoanComputational BiologyGenes, ProtozoanGiardia lambliaMicroscopy, ConfocalOrganellesProteomeProtozoan ProteinsProteomeProtozoan Proteins

Identifiers

PMID21723868
PMCPMC4521607
OpenAlexW2042358012

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.