Evidence map›Paper›PMID 21723253›Full record

ArticleBiochemical and biophysical research communications2011

SERPINB13 is a novel RUNX1 target gene.

Anita Boyapati, Bing Ren, Dong-Er Zhang

Abstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Anita BoyapatiThe Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA 92037, United States.
Bing Ren
Dong-Er Zhang
Scripps Research Institute · USUniversity of California, San Diego · US

Funding

Hematopoietic stem cell commitmentP01DK080665 · NIDDK · BETH ISRAEL DEACONESS MEDICAL CENTER · PI TENEN, DANIEL G · 2008 to 2012
$7.3M
Molecular Mechanism of Leukemogenesis Involving AML1-ETOR01CA104509 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ZHANG, DONG-ER · 2004 to 2025
$6.6M
T(8;21) in Blood Cell Proliferation and DifferentiationR01CA096735 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ZHANG, DONG-ER · 2003 to 2013
$3.4M
Novel AML1 and AML1-ETO targets in HematopoiesisF32HL079900 · NHLBI · SCRIPPS RESEARCH INSTITUTE · PI BOYAPATI, ANITA Y · 2004 to 2005
$97k
NCI NIH HHS CA096735NCI NIH HHS R01 CA096735NCI NIH HHS R01 CA104509NHLBI NIH HHS 5F32HL079900NHLBI NIH HHS F32 HL079900NIDDK NIH HHS DK080665NIDDK NIH HHS P01 DK080665
6 · The paper itself

Abstract

RUNX1 is a critical transcription factor during embryogenesis and neoplastic disease. To identify novel transcriptional targets of RUNX1 in the context of chromatin, we performed genome wide location analysis (ChIP-on-chip). Here we report that SERPINB13, a gene downregulated in head and neck cancers, is a novel RUNX1transcriptional target. RUNX1 binds the SERPINB13 promoter in chromatin to repress its transcription. Mutation of either RUNX1 binding site in the SERPINB13 promoter increased the activity of the promoter. Finally, overexpression of RUNX1 and concomitant decrease in SERPINB13 expression led to increased activity of cathepsin K, an enzyme inhibited by SERPINB13. These data demonstrate that RUNX1 is an important regulator of SERPINB13 and cathepsin K activity.

Indexed as

Gene Expression Regulation, NeoplasticCathepsin KCell Line, TumorChromatin ImmunoprecipitationCore Binding Factor Alpha 2 SubunitHead and Neck NeoplasmsHumansOligonucleotide Array Sequence AnalysisPromoter Regions, GeneticSerpinsUp-RegulationCathepsin KCore Binding Factor Alpha 2 SubunitRUNX1 protein, humanSERPINB13 protein, humanSerpins

Identifiers

PMID21723253
PMCPMC3312028
OpenAlexW2090298898

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.