Evidence map›Paper›PMID 21723170›Full record

ArticleMolecular cell2011

Integrative regulatory mapping indicates that the RNA-binding protein HuR couples pre-mRNA processing and mRNA stability.

Neelanjan Mukherjee, David L Corcoran, Jeffrey D Nusbaum, David W Reid, Stoyan Georgiev, Markus Hafner, Manuel Ascano, Thomas Tuschl, Uwe Ohler, Jack D Keene

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 447 papers.

0numbers the graph read from it
0cells of the map it votes in
447citing papers in PubMed
27.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

447 citing papers in PubMed, 659 citations in OpenAlex.

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387 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Neelanjan MukherjeeDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, NC 27710, USA.
David L Corcoran
Jeffrey D Nusbaum
David W Reid
Stoyan Georgiev
Markus Hafner
Manuel Ascano
Thomas Tuschl
Uwe Ohler
Jack D Keene
Duke University Hospital · USDuke University · USHoward Hughes Medical Institute · USRockefeller University · USDuke Medical Center · US

Funding

HIV-1: microRNA interactionsR01DA030086 · NIDA · DUKE UNIVERSITY · PI CULLEN, BRYAN R. · 2010 to 2014
$1.9M
Howard Hughes Medical InstituteNIDA NIH HHS DA030086NIDA NIH HHS R01 DA030086
6 · The paper itself

Abstract

RNA-binding proteins coordinate the fates of multiple RNAs, but the principles underlying these global interactions remain poorly understood. We elucidated regulatory mechanisms of the RNA-binding protein HuR, by integrating data from diverse high-throughput targeting technologies, specifically PAR-CLIP, RIP-chip, and whole-transcript expression profiling. The number of binding sites per transcript, degree of HuR association, and degree of HuR-dependent RNA stabilization were positively correlated. Pre-mRNA and mature mRNA containing both intronic and 3' UTR binding sites were more highly stabilized than transcripts with only 3' UTR or only intronic binding sites, suggesting that HuR couples pre-mRNA processing with mature mRNA stability. We also observed HuR-dependent splicing changes and substantial binding of HuR in polypyrimidine tracts of pre-mRNAs. Comparison of the spatial patterns surrounding HuR and miRNA binding sites provided functional evidence for HuR-dependent antagonism of proximal miRNA-mediated repression. We conclude that HuR coordinates gene expression outcomes at multiple interconnected steps of RNA processing.

Indexed as

RNA Processing, Post-TranscriptionalRNA StabilityAmino Acid MotifsAntigens, SurfaceBinding SitesComputational BiologyELAV-Like Protein 1ELAV ProteinsGene Expression RegulationHEK293 CellsHumansMicroRNAsRNA-Binding ProteinsRNA, MessengerRNA PrecursorsSoftwareAntigens, SurfaceELAVL1 protein, humanELAV-Like Protein 1ELAV ProteinsMicroRNAsRNA-Binding ProteinsRNA, MessengerRNA Precursors

Identifiers

PMID21723170
PMCPMC3220597
OpenAlexW2059646461

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.