Evidence map›Paper›PMID 21722858›Full record

ArticleAmerican journal of human genetics2011

Disruption of PTPRO causes childhood-onset nephrotic syndrome.

Fatih Ozaltin, Tulin Ibsirlioglu, Ekim Z Taskiran, Dilek Ertoy Baydar, Figen Kaymaz, Mithat Buyukcelik, Beltinge Demircioglu Kilic, Ayse Balat, Paraskevas Iatropoulos, Esin Asan and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed, 1 pooled it
5.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 1 synthesis or guideline pooled it, 112 citations in OpenAlex.

  1. Pooled it
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  3. Review
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  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
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  11. Article
  12. Review
  13. Article
  14. Genetic Disorders of the Glomerular Filtration Barrier.Clinical journal of the American Society of Nephrology : CJASN · 2020
    Review
  15. Review
  16. Article
  17. Journal of the American Society of Nephrology : JASN · 2019
    Article
  18. Panel sequencing distinguishes monogenic forms of nephritis from nephrosis in children.Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association · 2019
    Article
  19. Article
  20. Review

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 3 countries.

Fatih OzaltinPediatric Nephrology Unit, Department of Pediatrics, Hacettepe University Faculty of Medicine, Sihhiye, Ankara, Turkey. fozaltin@hacettepe.edu.tr
Tulin Ibsirlioglu
Ekim Z Taskiran
Dilek Ertoy Baydar
Figen Kaymaz
Mithat Buyukcelik
Beltinge Demircioglu Kilic
Ayse Balat
Paraskevas Iatropoulos
Esin Asan
Nurten A Akarsu
Franz Schaefer
Engin Yilmaz
Ayşin Bakkaloglu
PodoNet Consortium
Hacettepe University · TRGaziantep University · TRMario Negri Institute for Pharmacological Research · ITUniversity Hospital Heidelberg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Idiopathic nephrotic syndrome (INS) is a genetically heterogeneous group of disorders characterized by proteinuria, hypoalbuminemia, and edema. Because it typically results in end-stage kidney disease, the steroid-resistant subtype (SRNS) of INS is especially important when it occurs in children. The present study included 29 affected and 22 normal individuals from 17 SRNS families; genome-wide analysis was performed with Affymetrix 250K SNP arrays followed by homozygosity mapping. A large homozygous stretch on chromosomal region 12p12 was identified in one consanguineous family with two affected siblings. Direct sequencing of protein tyrosine phosphatase receptor type O (PTPRO; also known as glomerular epithelial protein-1 [GLEPP1]) showed homozygous c.2627+1G>T donor splice-site mutation. This mutation causes skipping of the evolutionarily conserved exon 16 (p.Glu854_Trp876del) at the RNA level. Immunohistochemistry with GLEPP1 antibody showed a similar staining pattern in the podocytes of the diseased and control kidney tissues. We used a highly polymorphic intragenic DNA marker-D12S1303-to search for homozygosity in 120 Turkish and 13 non-Turkish individuals in the PodoNet registry. This analysis yielded 17 candidate families, and a distinct homozygous c.2745+1G>A donor splice-site mutation in PTPRO was further identified via DNA sequencing in a second Turkish family. This mutation causes skipping of exon 19, and this introduces a premature stop codon at the very beginning of exon 20 (p.Asn888Lysfs*3) and causes degradation of mRNA via nonsense-mediated decay. Immunohistochemical analysis showed complete absence of immunoreactive PTPRO. Ultrastructural alterations, such as diffuse foot process fusion and extensive microvillus transformation of podocytes, were observed via electron microscopy in both families. The present study introduces mutations in PTPRO as another cause of autosomal-recessive nephrotic syndrome.

Indexed as

AdolescentAge of OnsetAmino Acid SequenceChildChild, PreschoolChromosomes, Human, Pair 12Codon, NonsenseConsanguinityExonsFemaleGenes, RecessiveGenome-Wide Association StudyHomozygoteHumansMaleMolecular Sequence DataCodon, NonsensePTPRO protein, humanReceptor-Like Protein Tyrosine Phosphatases, Class 3RNA Splice Sites

Identifiers

PMID21722858
PMCPMC3135805
OpenAlexW2052480809

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.