Evidence map›Paper›PMID 21720866›Full record

ArticleMammalian genome : official journal of the International Mammalian Genome Society2011

A locus on chromosome 9 is associated with differential response of 129S1/SvImJ and FVB/NJ strains of mice to systemic LPS.

Ivana V Yang, Holly R Rutledge, Jun Yang, Laura A Warg, Sergio D Sevilla, David A Schwartz

Abstract read
In one paragraph

Article in Mammalian genome : official journal of the International Mammalian Genome Society, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Ivana V YangCenter for Genes, Environment and Health and Department of Medicine, National Jewish Health, 1400 Jackson Street, A650, Denver, CO 80206, USA. yangi@njhealth.org
Holly R Rutledge
Jun Yang
Laura A Warg
Sergio D Sevilla
David A Schwartz
National Institute of Environmental Health Sciences · USNational Jewish Health · USLEM International (Switzerland)University of Colorado Denver · US

Funding

CENTER FOR INVIRONMENATL GENOMICSU19ES011375 · NIEHS · DUKE UNIVERSITY · PI LINNEY, ELWOOD ALBERT · 2001 to 2006
$8.8M
The Genetic Determinants of Innate Immunity and Host DefenseZ01ES101946 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI SCHWARTZ, DAVID · 2005 to 2008
$1.9M
Intramural NIH HHS Z01 ES101946NIEHS NIH HHS ES11375NIEHS NIH HHS U19 ES011375
6 · The paper itself

Abstract

Although polymorphisms in TLR receptors and downstream signaling molecules affect the innate immune response, these variants account for only a portion of the ability of the host to respond to microorganisms. To identify novel genes that regulate the host response to systemic lipopolysaccharide (LPS), we created an F2 intercross between susceptible (FVB/NJ) and resistant (129S1/SvImJ) strains, challenged F2 progeny with LPS via intraperitoneal injection, and phenotyped 605 animals for survival and another 500 mice for serum concentrations of IL-1β and IL-6. Genome-wide scans were performed on pools of susceptible and resistant mice for survival, IL-1β, and IL-6. This approach identified a locus on the telomeric end of the q arm of chromosome 9 (0-40 Mb) that was associated with the differences in morbidity and serum concentrations of IL-1β and IL-6 following systemic LPS in FVB/NJ and 129S1/SvImJ strains of mice. Fine mapping narrowed the locus to 3.7 Mb containing 11 known genes, among which are three inflammatory caspases. We studied expression of genes within the locus by quantitative RT-PCR and showed that Casp1 and Casp12 levels are unaffected by LPS in both strains, whereas Casp4 is highly induced by LPS in FVB/NJ but not in 129S1/SvImJ mice. In conclusion, our mapping results indicate that a 3.7-Mb region on chromosome 9 contains a gene that regulates differential response to LPS in 129S1/SvImJ and FVB/NJ strains of mice. Differences in the induction of Casp4 expression by LPS in the two strains suggest that Casp4 is the most likely candidate gene in this region.

Indexed as

Chromosomes, MammalianGenetic LociAnimalsCaspasesCaspases, InitiatorChromosome MappingCytokinesDisease Models, AnimalEscherichia coli InfectionsFemaleGenetic Predisposition to DiseaseKaplan-Meier EstimateLipopolysaccharidesMaleMiceMice, 129 StrainCasp4 protein, mouseCaspasesCaspases, InitiatorCytokinesLipopolysaccharides

Identifiers

PMID21720866
PMCPMC4157901
OpenAlexW2072504414

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.