Evidence map›Paper›PMID 21718053›Full record

ArticleAnalytical chemistry2011

Molecular detection of bacterial pathogens using microparticle enhanced double-stranded DNA probes.

Reza Riahi, Kathleen E Mach, Ruchika Mohan, Joseph C Liao, Pak Kin Wong

Abstract read
In one paragraph

Article in Analytical chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Synthesis of Fluorescence Turn-On DNA Hybridization Probe Using theCurrent protocols in nucleic acid chemistry · 2018
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Composite generalized Langevin equation for Brownian motion in different hydrodynamic and adhesion regimes.Physical review. E, Statistical, nonlinear, and soft matter physics · 2015
    Article
  12. Article
  13. Article
  14. Single cell gene expression analysis in injury-induced collective cell migration.Integrative biology : quantitative biosciences from nano to macro · 2014
    Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Reza RiahiDepartment of Aerospace and Mechanical Engineering, University of Arizona, Tucson, Arizona 85721, United States.
Kathleen E Mach
Ruchika Mohan
Joseph C Liao
Pak Kin Wong

Funding

An Integrated Diagnostic Biochip for Point of Care Pathogen IdentificationU01AI082457 · NIAID · PALO ALTO VETERANS INSTIT FOR RESEARCH · PI LIAO, JOSEPH C · 2009 to 2013
$3.7M
Mechanoregulation of Tissue MorphogenesisDP2OD007161 · OD · UNIVERSITY OF ARIZONA · PI WONG, PAK KIN · 2010 to 2010
$2.3M
Rapid Antimicrobial Susceptibility Test Cartridge for Resource-Limited SettingsR43AI088756 · NIAID · GENEFLUIDICS, INC. · PI GAU, VINCENT JEN-JR · 2010 to 2011
$700k
Rapid Antibiotic Susceptibility Testing for Neonatal Intensive UnitsR43HD065303 · NICHD · GENEFLUIDICS, INC. · PI GAU, VINCENT JEN-JR · 2010 to 2011
$434k
NIAID NIH HHS 1U01AI082457-01NIAID NIH HHS R43 AI088756NIAID NIH HHS R43AI088756-01NIAID NIH HHS U01 AI082457NICHD NIH HHS R43 HD065303NICHD NIH HHS R43HD065303-01NIH HHS 1DP2OD007161-01NIH HHS DP2 OD007161
6 · The paper itself

Abstract

Rapid, specific, and sensitive detection of bacterial pathogens is essential toward clinical management of infectious diseases. Traditional approaches for pathogen detection, however, often require time-intensive bacterial culture and amplification procedures. Herein, a microparticle enhanced double-stranded DNA probe is demonstrated for rapid species-specific detection of bacterial 16S rRNA. In this molecular assay, the binding of the target sequence to the fluorophore conjugated probe thermodynamically displaces the quencher probe and allows the fluorophore to fluoresce. By incorporation of streptavidin-coated microparticles to localize the biotinylated probes, the sensitivity of the assay can be improved by 3 orders of magnitude. The limit of detection of the assay is as few as eight bacteria without target amplification and is highly specific against other common pathogens. Its applicability toward clinical diagnostics is demonstrated by directly identifying bacterial pathogens in urine samples from patients with urinary tract infections.

Indexed as

Biological AssayBiotinDNADNA ProbesEscherichia coliFluorescent DyesHumansNucleic Acid HybridizationPseudomonasRNA, Ribosomal, 16SSensitivity and SpecificityStaphylococcus saprophyticusStreptavidinUrinary Tract InfectionsBiotinDNADNA ProbesFluorescent DyesRNA, Ribosomal, 16SStreptavidin

Identifiers

PMID21718053
PMCPMC4104485

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.