Evidence map›Paper›PMID 21717329›Full record

ArticleJournal of microbiology (Seoul, Korea)2011

Identification of the genes involved in 1-deoxynojirimycin synthesis in Bacillus subtilis MORI 3K-85.

Kyung-Don Kang, Yong Seok Cho, Ji Hye Song, Young Shik Park, Jae Yeon Lee, Kyo Yeol Hwang, Sang Ki Rhee, Ji Hyung Chung, Ohsuk Kwon, Su-Il Seong

Open access · greenAbstract read
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In one paragraph

Article in Journal of microbiology (Seoul, Korea), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 53 citations in OpenAlex.

  1. Review
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Kyung-Don KangR&D center for Life Science, Biotopia Co., Ltd. Chuncheon, Gangwon-do, 200-881, Republic of Korea.
Yong Seok Cho
Ji Hye Song
Young Shik Park
Jae Yeon Lee
Kyo Yeol Hwang
Sang Ki Rhee
Ji Hyung Chung
Ohsuk Kwon
Su-Il Seong
University of Suwon · KRKorea Research Institute of Bioscience and Biotechnology · KRKorea University of Science and Technology · KRSoonchunhyang University · KRYonsei University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

1-Deoxynojirimycin (DNJ), a D-glucose analogue with a nitrogen atom substituting for the ring oxygen, is a strong inhibitor of intestinal α-glucosidase. DNJ has several promising biological activities, including its antidiabetic, antitumor, and antiviral activities. Nevertheless, only limited amounts of DNJ are available because it can only be extracted from some higher plants, including the mulberry tree, or purified from the culture broth of several types of soil bacteria, such as Streptomyces sp. and Bacillus sp. In our previous study, a DNJ-producing bacterium, Bacillus subtilis MORI, was isolated from the traditional Korean fermented food Chungkookjang. In the present study, we report the identification of the DNJ biosynthetic genes in B. subtilis MORI 3K-85 strain, a DNJ-overproducing derivate of the B. subtilis MORI strain generated by γ-irradiation, xhe genomic DNA library of B. subtilis MORI 3K-85 was constructed in Escherichia coli, and clones showing α-glucosidase inhibition activity were selected. After DNA sequencing and a series of subcloning, we were able to identify a putative Operon which consists of gabT1, yktc1, and gutB1 genes predicted to encode putative transaminase, phosphatase, and oxidoreductase, respectively. When a recombinant plasmid containing this Operon sequence was transformed into an E. coli strain, the resulting transformant was able to produce DNJ into the culture medium. Our results indicate that the gabT1, yktc1, and gutB1 genes are involved in the DNJ biosynthetic pathway in B. subtilis MORI, suggesting the possibility of employing these genes to establish a large-scale microbial DNJ overproduction system through genetic engineering and process optimization.

Indexed as

Operon1-DeoxynojirimycinAmino Acid SequenceBacillus subtilisBacterial ProteinsBase SequenceCloning, MolecularEscherichia coliGlycoside Hydrolase InhibitorsMolecular Sequence DataOxidoreductasesPhosphoric Monoester HydrolasesPlasmidsRecombinant ProteinsSequence Analysis, DNATransaminases1-DeoxynojirimycinBacterial ProteinsGlycoside Hydrolase InhibitorsOxidoreductasesPhosphoric Monoester HydrolasesRecombinant ProteinsTransaminases

Identifiers

PMID21717329
OpenAlexW1984546214

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.